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- 10 - Mathematical Sciences
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- Imperial College of Science, Technology and Medicine
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- 10 - Mathematical Sciences
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- Is this case study continued from a case study submitted in 2014?
- No
1. Summary of the impact
Imperial researchers developed a new statistical framework to model the COVID-19 pandemic which has been used to inform the decisions of policy makers worldwide, for example, in the UK and the US, affecting the lives of millions. From the early stages of the first wave of the epidemic, the framework allowed quantification of the effectiveness of non-pharmaceutical interventions, especially lockdowns, contributing to worldwide understanding of the effect of such measures. This helped public health authorities communicate about, and maintain public support for, social distancing measures. After the first wave, the modelling framework was further developed and taken up by health authorities, e.g., in Scotland and New York, to guide ongoing policy decision-making during subsequent waves. The framework was also a key component in determining the speed of the spread of a new variant of SARS-CoV-2 (the ‘Kent variant’) detected in England, supporting the evidential basis which led to the introduction of Tier 4 measures in England in December 2020.
2. Underpinning research
On 11 March 2020, the World Health Organization declared a pandemic: SARS-CoV-2, the virus that causes COVID-19, had spread far and wide around the world. After the initial outbreak in China, the epicentre shifted to Europe, where countries were considering drastic strategies to control the epidemic, from banning public events to closing schools to lockdowns.
During this first wave of COVID-19, and due to limited testing and asymptomatic spread, reports of case numbers were not a reliable measure of the spread of SARS-CoV-2. This meant that existing approaches to quantifying R0, the basic reproduction number, and R(t), the time-varying reproduction number, were inadequate to answer the pressing questions facing public health authorities worldwide: How far had SARS-CoV-2 spread? Were control measures effective and, in particular, did they bring R below 1?
A group of Imperial academics, with expertise in epidemiology, statistics, and machine learning, led by Drs Flaxman, Mishra, Bhatt, Unwin, and Prof Gandy (Flaxman and Gandy are in the Department of Mathematics), started work on a new semi-mechanistic statistical modelling framework to understand the extent of the spread of SARS-CoV-2 infections in real-time, and to infer the effect of government interventions. The framework developed at Imperial relied on the following innovative approaches: 1) A novel fully Bayesian statistical model that accurately incorporates the time-delays between subsequent infections and between infections and observations (both cases detected and death numbers). 2) Leveraging of observations from multiple countries and regions, which previously existing epidemiological models did not do. 3) Open-source implementation in a probabilistic programming language (Stan) to enable widespread dissemination and reproducibility of the modelling approach.
The first results and the first model description were released as a preprint (“Report 13”) on 30 March 2020 (peer reviewed and updated in **[1]**) - Flaxman, Mishra, Gandy were joint first authors, Bhatt was last author, all with equal contributions. This works showed that lockdowns were beginning to be effective across Europe, in the sense of bringing the reproduction number below 1, at a time when death counts were still rising. It also estimated how many lives had already been saved through the non-pharmaceutical policy interventions.
From these methods and approaches, further research activity spawned at Imperial, including specific studies of the epidemic in Italy [2], Brazil [3], and the US [4], each including key novelties in the statistical models. The Italy report [2] was a subnational analysis incorporating data on human mobility. Brazil [3] provided the first subnational analysis of the reproduction number in Brazil, finding that R(t)>1 in all states analysed, meaning that the epidemic was not under control in Brazil in May. The US report [4] correctly warned about the precarious position of many states in the US at a critical period after the first wave.
Based on the methodology developed in [1-4], Imperial researchers developed an R package called “epidemia” [5]. In addition, the team also developed a local area model for the UK [6], made public on 3 September 2020, which provides projections of COVID-19 cases per 100,000 individuals at the local-authority (LTLA) level across all 4 nations of the UK. Daily updates to these projections are released on a public website. Estimates of R(t) from this model were essential to the rapid analysis of the increased transmissibility of the new B.1.1.7 variant of the virus in December 2020 [7].
3. References to the research
[1] Flaxman S*, Mishra S*, Gandy A*, Unwin HJT, Mellan TA, Coupland H, Whittaker C, Zhu H, Berah T, Eaton JW, Monod M, Imperial College COVID-19 Response Team, Azra C. Ghani AC, Donnelly CA, Riley S, Vollmer MAC, Ferguson NM, Okell LC, Bhatt S*, Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe, Nature 584, 257–261(2020), doi:10.1038/s41586-020-2405-7. Preprint on 30/03/2020 as “Report 13”, doi:10.25561/77731. *=contributed equally
[2] Vollmer MAC, Mishra S, Unwin HJT, Gandy A, Mellan TA, …[53 authors]..., Donnelly CA, Ferguson NM, Dorigatti I, Flaxman S, Bhatt S (2020) “Report 20: Using mobility to estimate the transmission intensity of COVID-19 in Italy: A subnational analysis with future scenarios”, medRxiv 2020.05.05.20089359, doi:10.1101/2020.05.05.20089359.
[3] Hawryluk I, Mellan TA, Hoeltgebaum H, Mishra S, Schnekenberg RP, Whittaker C, Zhu H, Gandy A, Donnelly CA, Flaxman S, Bhatt Samir (2020) Inference of COVID-19 epidemiological distributions from Brazilian hospital data, J. R. Soc. Interface.17:20200596, doi:10.1098/rsif.2020.0596. Preprint on 8/5/2020 as “Report 21”, doi:10.25561/78872.
[4] Unwin HJT*, Mishra S*, Bradley VC*, Gandy A*, Mellan TA, …[43 co-authors]…,Ghani, AC, Ferguson NM, Riley S, Donnelly CA, Bhatt S, Flaxman S (2020) State-level tracking of COVID-19 in the United States, Nature communications, 11(1), p. 6189, doi:10.1038/s41467-020-19652-6. Preprint on 21/5/2020 as “Report 23”, doi:10.25561/79231. *=contributed equally
[5] Epidemia R package https://imperialcollegelondon.github.io/epidemia/index.html
[6] Mishra, S., J. Scott, H. Zhu, N. M. Ferguson, S. Bhatt, S. Flaxman, and A. Gandy. 2020. “A COVID-19 Model for Local Authorities of the United Kingdom.” medRxiv, doi:10.1101/2020.11.24.20236661. Previous versions of the website: https://doi.org/10.5281/zenodo.4400238. Git repository with all versions: https://github.com/ImperialCollegeLondon/covid19localCurrent version of Website: https://imperialcollegelondon.github.io/covid19local/
[7] Volz E*, Mishra S*, Chand M*, Barrett JC*, Johnson R*, …[22 co-authors]…, Flaxman S, Ratmann O, Bhatt S, Hopkins H, Gandy A*, Rambaut A*, Ferguson N*, “Report 42: Transmission of SARS-CoV-2 Lineage B.1.1.7 in England: insights from linking epidemiological and genetic data,” doi: 10.1101/2020.12.30.20249034, 31 December 2020.
*=contributed equally
The report was released on 31 Dec 2020 at https://www.imperial.ac.uk/mrc-global-infectious-disease-analysis/covid-19/report-42-sars-cov-2-variant/; the above doi points to the MedRXiv Version which was made publicly available on 4 January 2021.
4. Details of the impact
The research of the Imperial team informed public and government understanding of the epidemic worldwide, was used by governments to justify maintaining restrictions, and had direct and extensive impact on policy decisions, particularly in Scotland (from April 2020) and New York State (from May 2020) and in the imposition of stronger restrictions in England in December 2020.
Public understanding and awareness: The research attracted strong public attention: At least 484 news stories from 332 outlets (e.g. BBC, Economist, Times, Financial Times, National Public Radio (US), Boston Globe, Washington Post) reported on [1-7], see [A]. The Altmetric score of [1] is greater than 6300, putting it amongst the top 250 articles of more than 16 million articles tracked on Altmetric [A]. The website reporting updates from [6] had more than 750k visitors from 142 countries up to the end of 2020 [A]. The news coverage was helping public understanding by picking up several results from the research, e.g.: results from [1] were used to show how many lives had been saved through the interventions (Daily Telegraph, **[A]**), that more individuals than previously thought has been infected (Economist, **[A]**), and to describe the state of the epidemic around the time of the first lockdown and to compare it to other European countries (The Times, **[A]**) ; local newspapers used [6] to inform about the likely development of the epidemic in their local area (Google News search, **[A]**).
Policy makers and health authorities used [1,4] to assess and evidence the effectiveness of interventions:
The Scottish government's assessment of lockdown effectiveness highlights our impact within this area. The Chief Statistician of Scotland states that “[…] *these methods have been crucial in our assessment that the lockdown in March in Scotland was effective, giving us confidence to sustain it and to be able to communicate our decisions to the general public.*” [C]
Members of the French government (the Health Minister, the Directeur Général de la Santé, President Macron) used [1] to demonstrate that lockdowns were working and to encourage the public to stay at home, using the slogan “one life saved every 8 minutes” [D].
The State of Michigan cited [4] in a legal case defending the legal basis of their public health measures, as well as on social media and in a press release, in the face of vehement opposition from a fringe (and violent) minority [E].
Impact on policy decisions, the general population and saving lives
The Scottish Government used [1,5,6] extensively. The Chief Statistician of the Scottish Government writes [C]:
*“Based on the source code released from Report 13, we developed a model for Scotland […]. This has been key in our decision making process throughout the epidemic. This model has been run on a weekly basis since the end of April 2020 […] Outputs from our model have also been central to the Scottish Government’s regular COVID-19 modelling updates, of key interest to members of the public. […] This has been a crucial input into ministerial decisions on advice for the Scottish population, including on whether to relax or to impose government restrictions.*”
From 29 October 2020, the Scottish government reports our local area estimates [6] and has been using them as criteria for areas transitioning between lockdown tiers [C]; 3 of the 5 criteria used are based on [6].
Overall, there has been strong impact in Scotland; quoting **[C]:
“[…] the methods developed by Imperial have been crucial in the Scottish Government’s response to the COVID-19 pandemic. These methods have formed a crucial part in many of our decisions during the pandemic and thus have had a profound impact on the entire Scottish population, helping to save many lives.”
Based on [1,4], the Imperial team developed a model for New York State (population ~19 million),
*“whose results were discussed weekly […] in the state’s determination of when regions should begin easing restrictions […] the modelling results have subsequently been used to assist in identifying hotspots and inform additional control strategies. The Imperial college team has been an important partner … in informing the state’s COVID response.*” [F]
New York State appointed a team of experts, including Dr Bhatt, “who, before giving a region the green light to move from one phase to the next, would review our data and then advise whether it was safe to continue the reopening of that region of the state” (Cuomo, **[F]**).
A model based on [1] has been influential in the State of Tennessee: “ We were able to construct our first model in one day, which we would never have been able to do without the work you shared. […] This model helped solidify the value of such measures, and safer-at-home in particular, for several leaders at a critical point in local decision making.” [G]
Tier 4 restrictions in England: On 19 December 2020, the UK government imposed stricter restrictions in several areas in England, due to the spread of a novel SARS-CoV-2 variant. The Prime Minister said: “NERVTAG’s early analysis suggests the new variant could increase R by 0.4 or greater. Although there is considerable uncertainty, it may be up to 70% more transmissible than the old variant.” [H] (NERVTAG is the “New and Emerging Respiratory Virus Threats Advisory Group” advising the UK government.)
The figures in the PM’s statement are the result of analysis by Imperial scientists (a group including Professors Ferguson, Gandy, Drs Mishra and Volz), which was presented to NERVTAG on 18 December 2020 [H] and later published as [7]. The Imperial analysis was based on genomic data as well as on linking local estimates of the reproduction number [6] to estimates of the proportion of the new variant present. Based on these results plus two further pieces of evidence from other scientists concerning the amount of virus present in samples of the new variant (PCR Ct values, viral load from genomic analysis) NERVTAG reached its conclusion [H].
By 30 December, twenty million more people in England were subject to the toughest level of tier restrictions. Further consequences of these results were travel bans imposed e.g., by France and Germany, to stop the spread of the new variant of SARS-CoV-2.
Further Policy Impact: Policy documents from the African Union, the European Union and the World Bank cited [1], see Altmetric, [A]. Prof Gandy gave evidence in the UK House of Commons based on [6] regarding the local spread of COVID-19 in the inquiry on “Lessons learnt from Covid-19” [B]. Prof Gandy and Dr Bhatt were appointed to the SPI-M subgroup of SAGE (Scientific Advisory Group for Emergencies) from 30/10/2020, contribution to consensus statements, for example through modelling outputs about the effectiveness of the first UK tier system.
5. Sources to corroborate the impact
[A] Media Impact (Archived here):
List of news reports
Report of number of visits to website of [6]
Google New Search on local newspapers using results from [6]
[B] Evidence to House Select Committee by Prof Gandy (Archived here) https://committees.parliament.uk/event/2362/formal-meeting-oral-evidence-session/
[C] Impact in Scotland – Evidence pack
Testimonial by the Chief Statistician of Scotland.
Use of local model in tiering decisions: https://www.gov.scot/publications/coronavirus-covid-19-allocation-of-levels-to-local-authorities/
[D] Impact in France (Archived here):
Tweets from the French Health minister on 31 March; ( https://twitter.com/olivierveran/status/1244998753616084992)
Link to the daily COVID-19 status update on 8 April from the “Directeur Général de la Santé” ( https://dai.ly/x7t6lnx) - remark at 8:30.
Tweet from the French President on 11 April. ( https://twitter.com/emmanuelmacron/status/1249042840241479682)
Newspaper articles (Le Parisien, Le Figaro) explaining the link to [1]
[E] Impact in Michigan (Archived here):
Court Case: https://www.clearinghouse.net/chDocs/public/PR-MI-0002-0011.pdf.
Social media ( https://twitter.com/GovWhitmer/status/1271114225482706945)
Press Release ( https://www.michigan.gov/coronavirus/0,9753,7-406-98163-531728--,00.html).
News article about opposition to lockdowns in Michigan https://www.nytimes.com/2020/10/11/us/whitmer-kidnapping-plot-michigan.html).
[F] Impact in New York State
Testimonial from the Commissioner of the Department of Taxes and Finances of New York State, who was a member of the Governor’s COVID-19 Task Force.
Cuomo, Andrew. 2020. American Crisis: Leadership Lessons from the Covid-19 Pandemic. Random House Inc. ISBN 978-0593239261. Chapter “May11 | 1,660 New Cases| 7,226 Hospitalised| 161 Deaths” , page 446.
[G] Impact in Tennessee: Testimonials by a member of the COVID-19 Response Unit academics from the University of Memphis, the University of Tennessee
[H] Impact on Tier 4 Decisions in England (Archived here):
“New evidence on VUI-202012/01 and review of the public health risk assessment” Report to NERVTAG meeting 18/02/2021 by Public Health England, with Imperial College, the University of Edinburgh, the University of Birmingham and the Wellcome Sanger Institute.
Minutes of NERVTAG Meeting on 18/12/2020.
Speech by the Prime Minister, Boris Johnson on 19/12/2020.
- Submitting institution
- Imperial College of Science, Technology and Medicine
- Unit of assessment
- 10 - Mathematical Sciences
- Summary impact type
- Technological
- Is this case study continued from a case study submitted in 2014?
- Yes
1. Summary of the impact
Successful application of Laminar Flow Control (LFC) is a strategic pillar in the aerospace industry aimed at improving fuel and noise efficiency of next generation aircraft (military, civilian and unmanned), irrespective of future propulsion systems. Imperial Mathematics research has produced state-of-the-art modelling tools for geometrical shape optimisation of laminar wings to accurately predict transition to turbulence and open the way for significant economic and environmental impacts. These tools are being used by Airbus, for example, to analyse and interpret data from their €200 million project, Breakthrough Laminar Aircraft Demonstrator in Europe (BLADE). In September 2017, BLADE flew as part of the €4 billion EU Clean Skies II initiative and showed that the laminar-flow transonic wing could reduce drag by 10% and reduce fuel burn by 5%. Imperial’s software has provided Airbus with key LFC design analysis tools for their product development.
2. Underpinning research
Researchers at Imperial Mathematics developed key breakthroughs in computational flow physics models that enable harnessing LFC technologies for the design of aircraft wings. These addressed crucial uncertainties of how to model and incorporate: (1) flow receptivity; (2) surface imperfections; and (3) fully three-dimensional (3D) wing geometry variations. Engagement with Airbus engineers and access to proprietary Airbus data created internationally unrivalled LFC modelling capability.
1. Flow Receptivity: Air flow disturbances are generated through resonance mechanisms arising from free-stream fluctuations coupling to wing roughness elements within a thin (<2mm) air boundary layer. This process, known as receptivity, plays a key role in the transition from laminar to turbulent flow. LFC wings are designed to push this transition front across the wingspan, as far downstream as possible. However, the stochastic nature of the freestream environment, coupled with small disturbances arising from gaps, fasteners, surface deformations and imperfections, as well as undesirable residues of dirt, de-icing fluid or rain droplets, make it immensely difficult to incorporate all such effects in laminar wing transition predictive tools. The Imperial team made theoretical breakthroughs in receptivity theory. Specifically, Ref [1] included the effect of wing vibrations; Ref [2] incorporates the random nature of the surface roughness field and Refs. [3,4] extend these approaches to the transonic regime in which commercial aeroplanes fly, adapt it to the wing geometry and sweep, and make the methods computationally efficient and feasible for the industrial design process.
2. Surface Imperfections - flow destabilisation due to steps, gaps and impact damage: Critical concerns for operational and LFC robustness are micron-scaled imperfections and misalignments of surfaces arising during wing manufacture, distortions due to aerodynamic pressure loads on longer and slimmer light carbon-fibre wings, and existence of small laminar separation bubbles (LSBs). The abrupt nature of these features means that local stability analyses are invalid or of little use in accurate design. The theory developed in [5] circumvents these limitations by characterising the transition via a transmission coefficient of disturbance amplitude across abrupt changes in surface topography. Such analytical findings underpinned novel computational tools that are fully capable of ascertaining flow destabilisation effects due to discontinuous changes in local geometry and presence of LSBs [6]. Publications [5, 6] enable, for the first time, quantitative predictions rather than empirical practices previously used in industry.
The above developments and computational advances based on the linear harmonic Navier-Stokes (LHNS) direct and adjoint models developed during [i,ii] lead to Dr Mughal’s development of the MiPSecR suite of high-fidelity computational tools.
3. Fully 3D modelling: Long-haul flight requires swept wings that produce 3D flows and must crucially accommodate Hybrid-LFC technology for active control. Hybrid-LFC involves suction through thousands of micron-sized laser-drilled holes on the surface, but current design tools use simplistic and unrealistic assumptions for Hybrid-LFC surface placement and 3D modelling.
Imperial research developed PPM-PSE3D, an efficient 3D surface-marching parabolised stability equations algorithm for the quantification of laminar flow instabilities over complete aircraft wings [7, 8]. These tools make no pseudo-3D assumptions and can model aerodynamic problems of practical importance and relevance to industry [ii].
The work was supported by a variety of funding sources, including direct support from Airbus, EPSRC [i], Innovate-UK through the ALFET project [ii], and Bombardier via the SANTANA project [iii]. DSTL and BAe Systems supported the initial development of PPM-PSE3D [7] .
3. References to the research
[1] Ruban AI, Bernots T, Pryce D, 2013, Receptivity of the boundary layer to vibrations of the wing surface. J. Fluid Mech., 723, Pages: 480-528, https://doi.org/10.1017/jfm.2013.119.
[2] Raposo H, Mughal MS, Ashworth R, 2018, Acoustic receptivity and transition modeling of Tollmien-Schlichting disturbances induced by distributed surface roughness, Physics of Fluids 30, 044105, https://doi.org/10.1063/1.5024909.
[3] Raposo H, Mughal M, Ashworth R, 2019, An adjoint compressible linearised Navier-Stokes approach to model generation of Tollmien-Schlichting waves by sound, J. Fluid Mech., 877, https://doi.org/10.1017/jfm.2019.601.
[4] Thomas C, Mughal S, Ashworth R, 2017, On predicting receptivity to surface roughness in a compressible infinite swept wing boundary layer, Physics of Fluids 29, 034102; https://doi.org/10.1063/1.4977092.
[5] Wu, X., Dong, M. 2016 , A local scattering theory for the effects of isolated roughness on boundary-layer instability and transition: transmission coefficient as an eigenvalue. J. Fluid Mech., 794, https://doi.org/10.1017/jfm.2016.125.
[6] Thomas C, Mughal S, Ashworth R, 2017, Development of Tollmien-Schlichting disturbances in the presence of laminar separation bubbles on an unswept infinite wavy wing, Phys. Rev. Fluids 2, 043903. https://doi.org/10.1103/PhysRevFluids.2.043903.
[7] Mughal, M. S. (2010). Application of Transition Modelling for Spanwise Varying Three-Dimensional Flows. Final Report, UK MOD contract C/EGC/N03507/C004 on “Critical Aerodynamic Technologies for ALUAV-Sensorcraft” ( available on request).
[8] Ashworth R., Mughal S., 2015, Modeling Three-Dimensional Effects on Cross-Flow Instability from Leading Edge Dimples. Procedia IUTAM 14, 201-210, https://doi.org/10.1016/j.piutam.2015.03.041.
Research grants:
[i] EPSRC (EP/I037946/1), PI: P Hall, Mar/11- Feb/16, £4,219,574, ‘ LFC-UK: Development of Underpinning Technology for Laminar Flow Control’.
[ii] UKRI (113022), Airbus led ALFET project, Imperial investigators: P Hall, Mughal, M. S. Jan/14 – Mar/19, £621,952, ‘ https://gtr.ukri.org/projects?ref=113022’
[iii] UKRI (113001), Bombardier Aerospace led SANTANA project, Imperial investigators: P. Hall, D. Papageorgiou, Jan/14 – Mar/18, £306,355, ‘SANTANA: System Advances in Nacelle Technology AerodyNAmics’
4. Details of the impact
Demand for air travel (despite the current pandemic) will continue to increase [A, B], with low drag airframes forming a cornerstone of design philosophy. Airbus continues to invest in LFC for the next generation of narrow body, hydrogen fuelled and battery–powered aircraft [C]. LFC technology offers up to 5% lower CO2 emissions corresponding to 3,000 tons of CO2 saved per aircraft annually [D]. Airbus states that:
“Wing design and production is a key capability for the UK. The supply chain impact of Airbus to the UK economy is worth £5 billion annually.” [E]
Imperial research contributed to key new technologies for the optimal design of laminar-flow wings for Airbus’s next generation aircraft programmes. This is a long-standing collaboration which resulted in co-authored publications, both in the underpinning research [2,3,4,6] and applied studies [F]. Airbus is using these advanced theoretical and computational tools in the industrial process of laminar wing design optimisation:
“Our collaborations with Imperial College have been ongoing for some time, but the period from 2015-onwards has been the most significant for us regarding its impact on our research direction in the field of Laminar flow wing design. This is due to the progression of the Imperial research from crucial fundamental aspects into an enhanced suite of theoretical tools that we are using in an industrial wing design setting.” [E]
The quality of methods is rated highly by Airbus
“The measure and scope of the work has been truly impressive due to (i) the robustness of Imperial software models enabling investigations of practical engineering problems, and (ii) the advanced physics fidelity of the Imperial software.” [E]
These tools allow Airbus to conduct investigations that have been previously impossible.
The Imperial state-of-the-art modern transition prediction methods for industrial design, have enhanced Airbus’s laminar flow analysis capability enabling the solution of previously intractable problems. ” [E]*
The new tools also aid LFC tests in industrial transonic wind-tunnel testing [G] led by the Aircraft Research Association (ARA).
Airbus invested €200 million towards the LFC BLADE project where the outer sections of an A340 aircraft had specially designed laminar flow wings [H]. This was part of the €4 billion EU Clean-Skies II initiative to reduce noise and emissions between 65-90% by 2050. Methods developed at Imperial were used in the analysis of the test flights:
“The computational suite comprising the 3D surface marching PSE algorithm (PPM-PSE3D) developed at Imperial and delivered to Airbus, was used by Airbus to analyse and interpret the data of its laminar flow wing demonstrator project using a A340-300 MSN001 “flight lab” aircraft. The flight tests (in 2017) were part of the Breakthrough Laminar Aircraft Demonstrator in Europe (BLADE) project sponsored by the EU Clean-Skies II initiative.” [E]
The impact of the analysis is the furnishing of a high-fidelity design tool for Airbus:
“The position of the laminar-turbulent front on the wing was predicted exceptionally well by PPM-PSE3D, making the software a high fidelity design tool that can be used alongside traditional empirical methods.” [E]
A major industry-wide barrier in predictive laminar wing performance has been the inability of modelling small-scale manufacturing and environmental uncertainties. Viability of LFC technology requires extremely tight control of manufacturing finishing standards and maintenance of tolerances during lifetime operation of aerodynamic surfaces. Imperial delivered to Airbus the MiPSecR receptivity software suite. The development has allowed several key areas (stochastic receptivity, steps–gaps, surface-roughness) to be investigated [2,3,4,6] and incorporated into advanced transition prediction software. Airbus state:
“Imperial’s receptivity software suite MiPSecR allows us to utilise its adjoint framework to simulate thousands of stochastic realisations and use uncertainty quantification to predict transition due to tolerances and imperfections.’' [E]
Capabilities facilitated by Imperial’s research offers Airbus significant time and cost savings in the development of optimised LFC aircraft (for both Hybrid LFC and natural LFC). This is achieved by facilitating faster design cycles using the developed advanced tools, and reducing the need for unnecessary and costly wind-tunnel tests, as corroborated by the supporting evidence:
“It is vital for Airbus to simulate such features in a controlled manner, so that the tolerances for building a laminar wing can be understood. The BLADE demonstrator flew over a hundred hours and collected such data. Imperial’s receptivity software suite MiPSecR allows us to utilise its adjoint framework to simulate thousands of stochastic realisations and use uncertainty quantification to predict transition due to tolerances and imperfections. Such state-of-the-art theoretical capabilities offer the potential to incorporate knowledge of manufacturing tolerances and real world limitations into future wing shape optimisation processes prior to expensive experiments and flight tests, again saving time and money.’' [E]
The Imperial research has contributed to the competitiveness of Airbus and its UK operations, as well as the broader position of the UK in advanced technologies and manufacturing:
“Each contribution to the excellence of the product enables Airbus to compete on the global stage and as such the Imperial College research is vital for the continued success of Airbus in the UK.” [E]
The process of developing and building a new aircraft is long, complex and costly. For example, the Airbus A380 “superjumbo”, announced in 1990, was delivered in 2005 with a cost of €25 billion. The design and manufacturing pipeline relies on fundamental knowledge and new technologies to provide a crucial competitive edge, and that is exactly what the research from Imperial has delivered and will continue to do as part of Airbus' plan to include LFC as a defining technology of a potential next-generation aircraft from the late 2020s.
5. Sources to corroborate the impact
[A] https://www.hlfc-win.eu/environmental-impact (Archived here)
[B] https://www.carbonbrief.org/guest-post-planned-growth-of-uk-airports-not-consistent-with-net-zero-climate-goal (Archived here)
[C] https://www.flightglobal.com/analysis/analysis-why-airbus-foresees-laminar-wings-on-next-gen-aircraft/128247.article (Archived here)
[D] https://www.hlfc-win.eu/environmental-responsibility (Archived here)
[E] Testimonial by the Research Project Leader for Virtual Product Engineering and the Partnerships Manager of Airbus.
[F] Applied papers co-authored with Airbus employees. (Archived here)
Ashworth R, Lawson S, Lowry S, Martinez-Cava A, Mughal M, Thomas C., et al., 2016, Numerical and experimental study of the tolerance of natural laminar flow on a wing to TS destabilisation at the leading edge /wing-box junction, Royal Aeronautical Society Applied Aerodynamics Conference, 19-21 July 2016, https://spiral.imperial.ac.uk/handle/10044/1/37402.
Kang, K. L., Ashworth, R., & Mughal, M. S. 2019. Stabilization of crossflow instability with plasma actuators: Linearized Navier–Stokes simulations. Proceedings of the Institution of Mechanical Engineers, Part G: Journal of Aerospace Engineering, https://doi.org/10.1177/0954410019842033.
Cooke, EE, Mughal, MS, Sherwin, S, Ashworth, R and Rolston, S. (2019). Destabilisation of Stationary and Travelling Crossflow Disturbances Due to Steps over a Swept Wing. AIAA Paper 2019-3533, http://dx.doi.org/10.2514/6.2019-3533.
Appel T, Mughal MS, Ashworth R, 2019, Global stability analysis of a boundary layer with surface indentations. AIAA paper 2019-3537, https://doi.org/10.2514/6.2019-3537.
[G] Use of research by the Aircraft Research Association (ARA) Ciarella, A, Lawson, S., Wong, P. and Mughal, MS, 2019. Aerodynamic and Transition Analysis of the Hybrid Laminar Flow Control Wing Experiment at the ARA Wind Tunnel. AIAA Paper 2019-3598. http://dx.doi.org/10.2514/6.2019-3598 (Archived here)
[H] BLADE test flight (Archived here)
- Submitting institution
- Imperial College of Science, Technology and Medicine
- Unit of assessment
- 10 - Mathematical Sciences
- Summary impact type
- Technological
- Is this case study continued from a case study submitted in 2014?
- Yes
1. Summary of the impact
The global proliferation of data science would be unimaginable without access to freely available software that automate the computations required for statistical learning. The first such general-purpose Bayesian software was WinBUGS. This widely used software brought flexible Bayesian data analysis to non-statisticians, stimulated the development of other currently popular Bayesian inference engines, and thereby created significant societal benefits and economic value. In terms of significance and reach, Bayesian inference engines are now used worldwide, making Bayesian data science more accessible to companies, government and NGOs. Monetary revenue is in the millions of USD, especially in the pharmaceutical industry. Wildlife from frogs to elephants benefitted through better conservation management. Hundreds of thousands of UK patients benefitted from improved clinical care based on cost-effectiveness analyses conducted with WinBUGS.
2. Underpinning research
Since the development of Markov Chain Monte Carlo methods in the 1990s, Bayesian methods and modelling have revolutionized statistical data science. Bayesian models are used in a variety of contexts – for example, they are used to forecast the weather, predict the spread of infectious diseases and optimize investment portfolios – however in all these real-world applications, sophisticated computational inference routines are essential. Implementing such algorithms typically requires expert skills at PhD level, and is time consuming. Therefore, the development of software for automated computational inference of Bayesian models has been a global major milestone in making modern statistical analyses broadly accessible. The first such software with global reach, WinBUGS [1, 2], was developed at Imperial College London (Imperial) and the MRC Biostatistics Unit in Cambridge (MRC-BSU). It is freely available online [1]. The contributions from researchers at both institutions were approximately equal [2]. Key collaborators were David Spiegelhalter (MRC-BSU and Statistical Laboratory Cambridge), Andrew Thomas (MRC-BSU after 2004), and Chris Jackson (MRC-BSU, 2007 onwards).
Prior to 2000, the first version of BUGS/WinBUGS was developed at MRC-BSU and could be used to fit Bayesian models described by log-concave full conditional distributions, for example linear regression models. In 1996, senior developers and the project moved from MRC-BSU to Imperial, and subsequent work, largely after 2000, turned early versions of the software into the first general-purpose Bayesian inference engine.
In 2000, the WinBUGS paper [3] was published in “Statistics and Computing”, authored by Lunn, Thomas, Best (all Imperial) and Spiegelhalter (MRC-BSU). The paper, which has >5,000 citations, presented the first general-purpose software for fitting complex Bayesian models through an interactive graphical interface, using flowcharts or simple commands to design models. This innovation made advanced statistical modelling and inference accessible to non-statisticians. The paper also showed that the principles of the inference engine were flexible and extensible. This prompted many further extensions that made WinBUGS a broadly applicable data science tool and inspired the development of better inference engines.
Since 2000, major extensions were spearheaded at Imperial, most of which are described in detail in the WinBUGS book [4]. Self-tuning Metropolis-Hastings samplers, self-tuning slice samplers, and reversible-jump samplers for fitting variable-dimension models were implemented [5], which greatly broadened applicability to models with full conditional distributions that are neither available in closed form nor log-concave. This allowed, for example, statistical inference with dynamic and non-linear pharmacokinetic/dynamic (PKPD) models [6] and led to widespread use of WinBUGS in pharma. The entire software architecture was also overhauled, especially so that sets of correlated random variables could be updated jointly. This enabled the routine inference of geospatial models, disease mapping, biodiversity mapping, and spatio-temporal regression, all of which taken together had a transformative impact on quantitative ecology, conservation biology, and public health.
Industry applications were further supported by the development of specialized interfaces at Imperial. Most notable among these were PKBUGS for fitting PKPD models as routinely used in pharma [6], and GeoBUGS for statistical inference with geospatial models [7] as routinely done for public health disease mapping. Building on the basic WinBUGS framework, further additions to the BUGs family of software were made outside of Imperial, such as the open-source version OpenBugs, interfaces to R, and parallel MCMC samplers for faster inference on multi-core computers.
3. References to the research
[1] The BUGS project, https://www.mrc-bsu.cam.ac.uk/software/bugs/
[2] Lunn DJ, Spiegelhalter D, Thomas A, Best N, The BUGS project: Evolution, critique and future directions. Statistics in Medicine, 28, (25) 3049-3067 (2009), doi:10.1002/sim.3680.
[3] Lunn DJ, Thomas A, Best N and Spiegelhalter D, WinBUGS - A Bayesian modelling framework: Concepts, structure, and extensibility, Statistics and Computing, 10, 325-337 (2000), doi:10.1023/A:1008929526011.
[4] Lunn D, Jackson C, Best N, Thomas A, Spiegelhalter D, The BUGS book: A practical introduction to Bayesian analysis. (2012). https://www.mrc-bsu.cam.ac.uk/software/bugs/the-bugs-project-the-bugs-book/
[5] Lunn DJ, Best N and Whittaker JC, Generic reversible jump MCMC using graphical models, Statistics and Computing, 19, 395-408 (2009), doi:10.1007/s11222-008-9100-0.
[6] Lunn DJ, Best N, Thomas A, Wakefield J and Spiegelhalter D, Bayesian Analysis of Population PK/PD Models: General Concepts and Software, Journal of pharmacokinetics and pharmacodynamics, 29, 271-307 (2002), doi:10.1023/A:1020206907668.
[7] Best N, Richardson S, and Thomson A, A comparison of Bayesian spatial models for disease mapping, Stat Methods Med Res, 14(1), 35-59 (2005), doi:10.1191/0962280205sm388oa.
4. Details of the impact
WinBUGS has had wide-reaching and very significant impact. Here we describe the continuing impact of WinBUGS since August 2013: how WinBUGS underpins the most popular tools for Bayesian data science, enabled the wide-spread dissemination of Bayesian methods, and how this had led to increasing impact to the economy, public health and conservation, in tandem with increasing use of Bayesian methods since 2013.
WinBUGS underpins globally used Bayesian inference software tools. Each day, data scientists across the globe utilize general-purpose software to approximate posterior distributions numerically and perform Bayesian inference. The most widespread software tools during the impact period have been WinBUGS, Stan, JAGS, NIMBLE and OpenBUGS, which are freely available including for commercial purposes. It was WinBUGS that first stimulated the development of this ecosystem of software solutions, which all started their development after WinBUGS (Stan was first released in 2012, NIMBLE in 2015, JAGS in 2007 and OpenBUGS in 2004 [A]), and continue to evolve (Stan last updated in 2021, NIMBLE: 2020, JAGS: 2015, OpenBUGS: 2013 **[A]**).
From the Stan Development Team [B]:
“Stan is based on similar principles as BUGS. […] We could not have done any of this without the groundbreaking work by the BUGS developers, both in terms of technology and community. … WinBUGS was way ahead of everything else in providing (1) a simple language to describe Bayesian models in shareable model files, and (2) technology to derive a generalized […] sampler for automated inference for many Bayesian models.”
From the co-lead developer of NIMBLE [B]:
*“BUGS has inspired many of the software packages that followed over time, including the very popular JAGS and Stan packages, as well as the NIMBLE package […]. It is safe to say that NIMBLE would not exist without the great success of WinBUGS […].*”
From the JAGS user manual [B]:
“*Many thanks to the BUGS development team, without whom JAGS would not exist.” *
It is difficult to track how many data science developers and analysists rely on any one of the freely available software solutions that WinBUGS inspired, though for Stan alone the number of users was estimated above 100,000 globally in 2020 [C], and the rstan, nimble, rjags, R2OpenBUGS and R2WinBUGS packages have been downloaded from R’s package distribution network CRAN more than 3.6 million times between 2013 and 2020 [C].
WinBUGS led to the global acceptance of Bayesian data analysis. WinBUGS not only met demand, but also created a data science market. The software helped professionals without a statistics degree to become well-versed in formulating and applying advanced statistical models in their domains, which in turn drove methodological development and better software. Indeed, WinBUGS has been directly linked to the explosive adoption of Bayesian methods across the world, and has become the de-facto standard for data analysis in some industries:
Prof. Lawson, wrote in this book “Bayesian Disease Mapping” in 2018 [D]:
“the development of the BUGS package and its Windows incarnation WinBUGS have had a huge effect on the dissemination and acceptance of [Bayesian] methods. A brief search for recently published papers referencing WinBUGS turned up applications in food safety, forestry, mental health policy, AIDS clinical trials, population genetics, pharmacokinetics, paediatric neurology and other diverse fields, indicating that Bayesian methods with WinBUGS indeed are finding widespread use”.
Professor McElreath, Director of the Max Planck Institute for Evolutionary Anthropology, wrote in November 2017 [E]:
“BUGS started a revolution in efficient, desktop Bayesian computation…It has done more than any other initiative to promote and advance applied Bayesian data analysis.”
The Director and Principal Statistician for systematic reviews and meta-analysis at Evidera PPD states in on 26 October 2020 [F]:
*“The majority of our work is conducting Bayesian network meta-analyses (NMAs), generally to support health economic modeling. As you may know, the methodological leadership in the area comes from NICE, and their guidance exemplar codes are in WinBUGS.*”
Impact in the Economy: WinBUGS and the many data science software solutions that it stimulated are providing substantial economic value, estimated to be in millions of US dollars. For example:
The Director and Principal Statistician for systematic reviews and meta-analysis projects at Evidera PPD, writes [F]:
*“WinBUGS and its descendants has greatly facilitated our application of the most advanced statistical methods to the challenging problem of indirect comparisons between treatments [of pharmaceuticals]. Providing such inferences and evidence is mandatory in more and more settings, and the commercial value to Evidera PPD for those projects has been in the millions of dollars, leading to many submissions (and approvals) for our clients.*”
The Head of Advanced Methodology and Data Science (AMDS) group, Novartis Global Drug Development, writes [G]:
“Especially over the last five years, we have streamlined and now routinely use robust and automated statistical inference software in drug development, and WinBUGS played a pivot role in this development. Thus, WinBUGS and related projects have undoubtedly had an enormous impact on the efficiency, cost-effectiveness and economic value of drug development benefiting the pharmaceutical R&D process at Novartis but more importantly benefiting patients across the world.”
Impact in public health: The recommendations of the National Institute for Health and Care Excellence (NICE) aim to optimally allocate resources and maximize the quality of life of people in the UK based on cost-effectiveness and are typically taken up in care [H]. WinBUGS or JAGS were used in 26% (n=37) of the clinical guidelines that were published between 2013/08 and 2017/12 and had the full guidelines text available online [H], illustrating how these tools have helped drive effective and affordable healthcare in the UK. For example, the NICE impact mental health report describes the early intervention pathways that were implemented across NHS England as a result of guideline CG178, benefiting approximately 550,000 people diagnosed with severe mental illness in 2017/18 in the UK [H]. CG178 was published in 2014; WinBUGS was the main tool used for the statistical evaluation of the evidence [H].
Impact in Conservation: The ability of WinBUGS to fit geospatial models, and the same ability of the later software tools that BUGS inspired, have been frequently used in quantitative ecology, and have contributed to conservation management and policy.
One exemplar is the illegal ivory trade, for which JAGS was used annually between 2013-2018 to characterize global trends for the United Nations Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) [I]. The estimates underpinned situation reports, informed CITES policy, numerous press releases, and national ivory action plans in Central Africa [I].
There are hundreds of similar examples, for example on wildfire management or the growling grassfrog, an endangered amphibian mainly found on the outskirts of Melbourne, for which national conservation management plans were created based on OpenBUGS. Co-author Professor McCarthy of the University of Melbourne wrote to us [J]:
*“This model is now being used by the Victorian government to plan management actions that are worth tens of millions of dollars, helping to ensure that this money is spent as efficiently as possible.*”
5. Sources to corroborate the impact
[A] First release dates of software building on WinBUGS (Archived here)
Stan: https://github.com/stan-dev/stan/releases?after=v1.0.1
JAGS: version 4.3.0 user manual (page 5) https://www.r-project.org/conferences/DSC-2003/Proceedings/Plummer.pdf, https://sourceforge.net/projects/mcmc-jags/files/JAGS/1.0/
OpenBUGS: http://openbugs.net/w/Overview
[B] Evidence that software tools build on WinBUGS
Letter of support from the Stan Development team.
Letter of support from the NIMBLE Development team.
JAGS manual https://sourceforge.net/projects/mcmc-jags/files/Manuals/4.x/jags_user_manual.pdf/download; quote is on page 5 (Archived here) .
[C] Evidence that software tools are widely used (Archived here)
Stan user forum, post https://discourse.mc-stan.org/t/how-many-stan-users-are-there/12196/22, published 2020/12/22. Last accessed 2021/01/25.
CRAN download statistics, R command sum(cranlogs::cran_downloads(package = c("rstan","rjags","nimble","R2WinBUGS","R2OpenBUGS", "BRugs"), from = "2013-08-01", to = "2020-12-13")$count). Last accessed 2021/01/25.
[D] Lawson AB, Bayesian Disease Mapping, 2018, ISBN-10: 1584888407 p3 (See https://www.amazon.co.uk/Bayesian-Disease-Mapping-Hierarchical-Interdisciplinary/dp/1584888407 - look inside preview (Archived here)).
[E] Online post published 2017/11/08, https://elevanth.org/blog/2017/11/28/build-a-better-markov-chain/. (Archived here)
[F] Letter of support by the Director and Principal Statistician for systematic reviews and meta-analysis projects at Evidera PPD.
[G] Letter of support from the Head of Advanced Methodology and Data Science (AMDS) group, Novartis Global Drug Development.
[H] Impact on NICE evaluations (Archived here):
Take-up of NICE recommendations in care https://www.nice.org.uk/about/what-we-do/into-practice/measuring-the-uptake-of-nice-guidance, last accessed 2021/01/25;
NICE Guidelines using WinBUGS, 2013/07 to 2018/12 search results, pdf;
specific evidence on impact in mental health clinical practice https://www.nice.org.uk/Media/Default/About/what-we-do/Into-practice/measuring-uptake/NICEimpact-mental-health.pdf, last accessed 2021/01/25.
Use of WinBUGS in CG178 (e.g. 391 WinBUGS cite in methods) https://www.nice.org.uk/guidance/cg178/evidence/full-guideline-pdf-490503565
[I] The original paper using OpenBUGS is doi:10.1371/ journal.pone.0076539, published 2013/10 (Archived here). Situation reports and CITES policy guidance documents are available online at https://www.cites.org/eng/prog/mike/index.php. Press releases are online available at https://www.cites.org/eng/news/pr/index.php. Last accessed 2021/01/25.
[J] Letter of support from the Deputy Director of the Australian Research Council Centre for Excellence for Environmental Decisions.
- Submitting institution
- Imperial College of Science, Technology and Medicine
- Unit of assessment
- 10 - Mathematical Sciences
- Summary impact type
- Technological
- Is this case study continued from a case study submitted in 2014?
- No
1. Summary of the impact
Threats to cyber-security are a global problem, affecting business, government and society. Researchers at Imperial have developed statistical methods and data science techniques which have helped strengthen cyber-security across these domains to safeguard the privacy, wealth and wellbeing of all members of society.
These methods and techniques have been integrated into: 1) Microsoft Defender Antivirus, part of the Microsoft Windows operating system that detects 5 billion cyber threats on devices worldwide every month, and 2) PathScan and Credential Analytics, security and malware offerings from Ernst & Young Global Limited (EY), which are licenced to businesses worldwide. Microsoft enterprise security products are used by “90% of the Fortune 500” companies and one billion Windows 10 users. The EY security platform has “clients across the globe”. This impact benefits Microsoft and EY commercially and hundreds of millions of users worldwide benefit from improved security and safety.
2. Underpinning research
Research and development from the Statistical Cyber-Security Research group of the Department of Mathematics at Imperial, led by Nick Heard and Niall Adams, has driven the innovation of statistical models for network host behaviours and traffic patterns which can be observed within an enterprise computer network.
This ongoing work began in 2010, originally through studying anomaly detection for dynamic graphs, and has evolved into several strands of research for modelling computer networks at different levels of granularity. The microscopic level research has been concerned with building probabilistic models for the traffic passing along an edge between two nodes (hosts) in a computer network [1,3], identifying automated and human traffic, learning temporal behaviour patterns and clustering hosts and users based on similarities in their connectivity patterns [6]. At the macroscopic level, research has investigated whole-network analyses using graph theory and spectral methods, concerned with predicting new connections in a network [2]; and in changepoint analysis, monitoring traffic for sudden deviations [4] like the WannaCry ransomware attack of 2017 [B].
Besides explicit cyber modelling, related research has also branched into more theoretical work on changepoint analysis and meta-analysis. Interest in the former stems from the need to run anomaly detection techniques which can adapt to the heterogeneity and ever-changing nature of a typical enterprise network; adaptive forgetting-factor changepoint analysis techniques originating from Imperial [4] have been particularly influential.
Similarly, research on meta-analysis has been driven by empirical understanding that detection of a network intruder requires the combination of weak signals from several statistical analytics or techniques, as no single network event or occurrence can necessarily imply the presence of an attack (otherwise, network protocols will simply be configured to block such actions). For combining information sources to detect cyber-attacks, research from Imperial on selecting optimal methods for combining p-values [5] has been pivotal; this contribution is also noted in a letter of support from Microsoft.
The research in cyber-security has been driven by key collaborators in the application domain who have helped to shape the direction of innovation and have led to implementation of methods for contracted projects and commercial exploitation through patents and software licencing as follows.
Collaboration with Ernst and Young Global Ltd (EY) has been conducted via a three-way relationship with Los Alamos National Laboratory, who have a formal collaborative research and development agreement with EY in the US. Student internships each year since 2011 have led to co-creation of patentable technologies.
Direct collaboration with Microsoft has been established through research visits from NH and NA and annual summer internships for Imperial PhD students from the Statistical Cyber-Security Research group. The research directions in anomaly detection and information synthesis at Imperial lead by NH and NA have been strongly influenced by domain understanding established through this collaboration.
The research efforts of NA and NH were substantially supported by five and six-year secondments respectively to the Heilbronn Institute for Mathematical Research [i, ii]. Other funding institutions and collaborators include:
the National Cyber Security Centre,
the Alan Turing Institute and
Los Alamos National Laboratory.
3. References to the research
[1] Turcotte, M. J. M., Heard, N. A. and Kent, A. D. (2015) Modelling user behaviour in a network using computer event logs. In Dynamic Networks in Cybersecurity. Imperial College Press, doi:10.1142/9781786340757_0003.
[2] Turcotte, M. J. M., Moore, J., Heard, N. A. and McPhall, A. (2016) Poisson Factorization for Peer-Based Anomaly Detection. In proceedings of IEEE Intelligence and Security Informatics Conference (ISI2016), Cybersecurity and Big Data, doi:10.1109/ISI.2016.7745472.
[3] Turcotte, M. J. M., Heard, N. A. and Neil, J. (2014) Detecting Localised Anomalous Behaviour in a Computer Network. In Advances in Intelligent Data Analysis XIII, 321–332, doi:10.1007/978-3-319-12571-8_28.
[4] Plasse J. and Adams N., (2019) Multiple changepoint detection in categorical data streams, Statistics and Computing, 29, 1109-1125, doi:10.1007/s11222-019-09858-0.
[5] Heard, N. A. and Rubin-Delanchy, P. T. G. (2018) Choosing Between Methods of Combining p-values. Biometrika, 105, 1, 239-246, doi:10.1093/biomet/asx076.
[6] Heard, N. A., Palla, K. and Skoularidou, M. (2016) Topic modelling of authentication events in an enterprise computer network. In proceedings of IEEE Intelligence and Security Informatics Conference (ISI2016), Cybersecurity and Big Data, doi:10.1109/ISI.2016.7745466.
Funding programmes:
[i] Secondment of NA to Heilbronn Institute for Mathematical Research (2011-2016, £380,690)
[ii] Secondment of NH to Heilbronn Institute for Mathematical Research (2013-2019, £385,432)
4. Details of the impact
Imperial College research has been incorporated into Microsoft Defender, which is part of all modern Microsoft Windows versions, and into cyber-analytic software from EY.
Global critical national infrastructures face a growing and evolving threat from cyber-attacks, and our modern networked economy relies heavily on maintaining secure environments for exchanging, storing, and protecting business and consumer data and intellectual property. There is now a consensus amongst government and industry experts that statistical and machine learning techniques have an important role to play in current and future security defences. Providing statistical cyber-security solutions to industry effectively strengthens the UK and world economies. Cyber-security is therefore an emerging and strategically important field in statistics and the Statistical Cyber-Security Research group at Imperial is at the forefront, working closely with both government and industry, developing methods tailored to the most pressing security problems.
A single cyber breach, depending on the country and industry, has been estimated to cost on average $3.86 million, rising to an average of $8.64 million for the US [A]. The WannaCry attack of 2017 indiscriminately targeted Microsoft Windows operating systems that were not patched with respect to a known exploit. In the short period the attack was active, an estimated 230K computers were compromised globally [B]. Besides causing financial losses reaching approximately $4bn, WannaCry impacted the computer systems of NHS hospitals and surgeries, disrupting care for those in urgent need.
The Credential Analytics software of EY uses research from papers [1,2], which provide statistical models for detecting the actions of an intruder on an enterprise work using authentication and computer event logs. The EY PathScan analytic uses research from paper [3], concerned with detecting anomalous network traversal.
To enable this, three joint patent applications (two granted [C, D], one pending) have been filed by Imperial in collaboration with Los Alamos National Laboratory, a US research lab funded by the US Department of Energy. Two pieces of statistical software utilising these patents have been licensed by EY, for commercial distribution in their cyber-security platform called PathScan, which has been deployed within large international corporations. Quoting the letter of support from EY [E],
“EY have used the research from the Imperial-authored papers and patents listed below to develop two of our offerings in Cyber Analytics: PathScan and Credential Analytics […] In the 4+ years since, we have invested roughly 27 person-years to develop a scalable, sustainable product. We have clients across the globe, and have found particular success in APAC and the Middle East. EY is [also in] active discussions to license the IP associated with Credential Analytics. Again, with our LANL partners, we invested 4 person-years in 2018”.
Microsoft Defender Antivirus claims to deliver “comprehensive, ongoing, and real-time protection against software threats like viruses, malware, and spyware across email, apps, the cloud, and the web” [F]. This software is deployed worldwide on all devices running modern versions of the Microsoft Windows operating system, including Windows 10, Windows 7 and Windows Server. To quantify the scale of this provision, it should be noted that there are more than 1 billion devices running Windows 10 [G].
Microsoft have implemented solutions in their security product Microsoft Defender Antivirus using anomaly detection techniques from [2,4,6] for respectively modelling behavioural patterns, performing change detection with adaptive forgetting-factors, and latent feature modelling of hosts and users on enterprise networks. Furthermore, the anomaly scores from the range of analytics being run by Microsoft Defender are combined into a single measure of surprise using results in meta-analysis published by the Statistical Cyber-Security Research Group at Imperial [5].
Quoting the letter of support from Microsoft [H],
“Various methods described in these papers have been implemented in our products, including:*
P-value combination, which we use as part of our lateral movement detection, leading to over 2 million detections of malicious behavior per month.
Adaptive forgetting factors, which influence many of our streaming algorithms, and which represent approximately 20% of our overall detection portfolio.”
In the above, “P-value combination” refers to [5] and “Adaptive forgetting factors” refer to [4]. Microsoft’s letter continues:
“The scale at which we operate (again, over 6 trillion signals analyzed daily) means that any new production algorithms must be implemented in the face of enormous compute, memory, and storage challenges. The fact that research and development from Imperial has successfully been transitioned into production is a testament to the importance we place on the cutting-edge work coming from the College.”
5. Sources to corroborate the impact
[A] IBM Cost of a Data Breach Report (Archived here)
[B] Information about the Wannacry Ransom Attack (Archived here)
[C] EY Credential Analytics patent: M. Turcotte, N.A. Heard and A. Kent. Modelling Behavior In A Network Using Event Logs, 2016. US Provisional Patent filed with Los Alamos National Laboratory (Archived here)
[D] EY PathScan patent: M. Turcotte, N.A. Heard and J.C. Neil., December 12, 2013. WO Patent App. PCT/US2013/031,463. Los Alamos National Security, LLC and Imperial Innovations Limited. (Archived here)
[E] Letter of Support from Partner/Principal, EY Cyber
[F] Information about Microsoft Cyber Security Strategy (Archived here)
[G] Number of Windows 10 devices https://news.microsoft.com/bythenumbers/en/windowsdevices (Archived here)
[H] Letter of Support from Principal Data Scientist Lead, Microsoft Defender Advanced Threat Protection, Microsoft Corp
- Submitting institution
- Imperial College of Science, Technology and Medicine
- Unit of assessment
- 10 - Mathematical Sciences
- Summary impact type
- Health
- Is this case study continued from a case study submitted in 2014?
- Yes
1. Summary of the impact
A statistical tool for monitoring the quality and safety of hospital care using routine data, developed at Imperial with Dr Foster Ltd and used by managers and clinicians in over half of English NHS hospitals, has improved standards of care and saved lives and continues to do so. The tool was a major factor behind the Francis Inquiry into the high mortality at Mid Staffordshire NHS Trust. The Inquiry led to the 2013 UK Department of Health’s Keogh Mortality Review that used Dr Foster data and put 11 high-mortality hospitals into special measures. In 2014, the regulator reviewed how these hospitals responded and noted many improvements in their quality of care. Imperial’s 2018 evaluation found that 70% of the tool’s alerts identify quality-of-care problems, leading hospitals to change their processes, improving standards, and lower their mortality rates.
2. Underpinning research
Statistical research at Imperial, led by Professors Bottle, Aylin and Best, produced novel statistical methods to monitor variations in quality and safety in healthcare using routinely collected hospital administrative data (Hospital Episode Statistics, HES). Professor Best was submitted as part of the Mathematics Unit of Assessment in the 2014 REF. In initial work [1], the Imperial team assessed the feasibility of setting up a system for the surveillance of patient outcomes (e.g., death) using such data. This work focused on the data requirements and statistical issues involved, especially multiple testing and the between-unit variation that is produced by the net effect of many small unmeasured factors (patient mix, data errors, etc). A more detailed analysis and discussion of the statistical issues in setting up such a system was presented in [2].
One key result of this work [1,2] was the identification of log-likelihood cumulative sum control charts as the most useful approach for continuous surveillance; this was based on the comparison of various possible approaches and required adaptations of the methods. These statistical methods had originally been developed for industrial processes, and their use had been suggested in smaller-scale settings, but the statistical research conducted at Imperial demonstrated how they can be used in practice across many hospitals and patient groups.
Based on these developments, and together with a commercial partner (Dr Foster Ltd), Imperial researchers developed a national online surveillance tool using routine administrative data. Designed to monitor hospital outcomes across hundreds of diagnosis and procedure groups, with data updated monthly [3], the tool monitors the outcomes of death, emergency readmission and long length of stay. The relationship between Dr Foster and Imperial has been ongoing since 2002, with Dr Foster Ltd partially funding the Dr Foster Unit at Imperial, which Profs Bottle and Aylin co-direct.
Another key development of the underpinning statistical research were methods to limit the rate of false alarms caused by the large number of comparisons being made between hospitals and over time. In addition to dealing with this multiple-comparison problem, after creating the monitoring tool in 2007, the Imperial team found it was important to tailor the alerting threshold to the size of each hospital and the expected outcome rate for each patient group. In [4], they accounted for these issues both analytically and through simulation studies. The false alarm rate often showed non-linear relations with the threshold, volume, and expected mortality rate. However, [4] presented an equation that provided a good approximation to the simulated values, resulting in more appropriate alerting thresholds for each hospital and patient group.
Another challenge in monitoring is how to adjust for patient risk factors such as age, comorbidities etc. to ensure hospitals are compared fairly. The monitoring system does this through logistic regression; due to the hundreds of risk-adjustment regression models, some automation is very desirable, which [5] showed was as effective for this purpose as manual model-building. With minor modifications, the methods in [4] and [5] are still used in the monitoring tool today.
3. References to the research
[1] Aylin P, Best N, Bottle A, Marshall C. Following Shipman: a pilot system for monitoring mortality rates in primary care. Lancet 2003;362:485-491, doi:10.1016/S0140-6736(03)14077-9.
[2] Marshall C, Best N, Bottle A, Aylin P. Statistical issues in the prospective monitoring of health outcomes across multiple units. J Royal Statist Soc A 2004;167:541-559, doi:10.1111/j.1467-985X.2004.apm10.x.
[3] Bottle A, Aylin P. Intelligent information: a national system for monitoring clinical performance. Health Serv Res 2008;43(1 Pt 1):10-31, doi:10.1111/j.1475-6773.2007.00742.x.
[4] Bottle A, Aylin P. Predicting the false alarm rate in multi-institution mortality monitoring. J Operational Res Soc 2011;62(9):1711-1718, doi:10.1057/jors.2010.121.
[5] Jen MH, Bottle A, Kirkwood G, Johnston R, Aylin P. The performance of automated case-mix adjustment regression model building methods in a health outcome prediction setting. Health Care Manag Sci 2011;14(3):267-78, doi:10.1007/s10729-011-9159-6.
Grant
Evaluation of a national surveillance system for mortality alerts, 2014-16, £627,000. National Institute for Health Research HS&DR project 12/178/22. Aylin P (PI), Vincent C, Benn J, Bottle A.
4. Details of the impact
The creation of a monitoring tool using the underpinning statistical research with the commercial partner Dr Foster Ltd has helped the NHS improve care and save lives since 2007. This case study describes the impact since 1 August 2013, but we first give some important background.
Before the current REF impact period, our hospital monitoring system identified high mortality at Mid Staffordshire NHS Trust. The alert letters sent by Imperial to the trust and the national regulator, the CQC, helped trigger CQC inspections, which led to a public inquiry (Francis Inquiry). The resulting report [A], published in February 2013, notes Imperial’s and Dr Foster’s contribution: *“There is no doubt that, without the work of the Dr Foster Unit and Dr Foster [Ltd], comparative mortality statistics would not have been published as quickly, or as fully, as they now are.*” One of the consequences of the Francis Inquiry was the investigation of other high mortality hospitals, which led to the Keogh Mortality Review [B], published in July 2013. The Review used in part our monitoring tool’s HSMRs (measures of hospital death rates) to spot high-mortality hospitals, and 11 out of 14 high-mortality hospital trusts were put into special measures. In 2013, the 11 trusts had 570,000 admissions and 21,000 deaths.
This resulted in improvements in the quality of care, mostly in the period after August 2013. The CQC assessed the 11 hospital trusts in August 2014 and found many improvements [C]. For example, one of those hospitals, Sherwood Forest, put in place regular audits and sufficient handover time between shift changes. With higher-than-expected mortality in 2014, they proceeded to transform sepsis care as a direct response to our mortality figures. Improvements continued over the coming years – see Dr Foster online case study [D]: “ The Trust has seen a significant reduction in its mortality rates, with deaths below the expected level since April 2016....for the first time since 2010”. They have around 50,000 admissions and nearly 2,000 deaths each year; NHS Digital’s SHMI web pages report their relative risk (the risk-adjusted rate compared with the national average, known as the SHMI) as 1.10 for Jan-Dec 2012, falling to 0.95 for Jan-Dec 2016.
To investigate the impact of the monitoring system beyond those 11 trusts, in 2018 Imperial staff evaluated the monitoring tool in a peer-reviewed report to NIHR [E], including interviews with and quotes from staff at site visits plus a national survey. Although the study time period straddled August 2013, it provides a robust summary of the monitoring system. The study included 532 alerts sent to 139 hospital trusts; 71 trusts responded to the survey, and 11 hospitals were visited as case studies. The evaluation found:
Quality of care was cited as a factor in 70% of investigations into the alerts
On average, the relative risk of death fell by 58% during the 9-month period immediately following an alert and then levelled to a slow decline
Full action plans were created in 77% of trusts investigated, and several hospitals reported positive changes in culture. The tool changed how some hospitals respond to information such as death rates, leading to changes in their processes. For example, before receiving our alert regarding heart attacks, one site reported poor communication, and one doctor had been disciplined for speaking out about poor care. As a direct response to our alert letter, a new mortality committee was set up, reviewing every death. A chest pain pathway was introduced across the trust, and new coronary care facilities and more consultants were approved.
This impact had significant reach between August 2013 and December 2020: we sent out 1,312 alert letters to hospitals, covering nearly 41,000 deaths during this period.
Many hospitals report the HSMR for specific patient groups in their annual Quality Accounts and set targets for the following years: the source of these figures is our monitoring tool. An example is sepsis at Oxford University Hospital in 2017/8, with reports of improvements in both care processes and the HSMR for sepsis in 2018/19 [F]: the trust had 1,503 inpatients with sepsis in 2018/19.
Besides the public health impact, there are financial impacts. Dr Foster benefit financially from the underpinning research, which they sell, together with further analysis and support undertaken by their staff, to NHS organisations and others: in June 2018, their annual turnover was £6.5m, with 67 employees [G]. Telstra Health acquired them in 2015, a deal reportedly worth 25-30 million Australian dollars [I]; the monitoring system developed with Imperial and the expertise provided by the Imperial unit were important elements of that deal [H]. Dr Foster were the first organisation worldwide to publish hospital-level death data (as HSMRs) in national newspapers, working with hospitals to understand and improve their performance. As UK pioneers of healthcare analytics, Dr Foster Ltd led the way in the use of HES data and statistical methods, which was then followed by competitors such as CHKS and HED and helped create a market now worth $2.7bn in Europe alone [J].
5. Sources to corroborate the impact
[A] Francis Report from the Mid Staffs Public Inquiry. Quote is in paragraph 5.237. https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/279115/0898_i.pdf (Archived here)
[B] Keogh Mortality Review of Jul 2013: https://www.nhs.uk/nhsengland/bruce-keogh-review/documents/outcomes/keogh-review-final-report.pdf (Archived here)
[C] CQC report “Special measures: one year on” on hospitals flagged as high mortality that were put into special measures and what improvements they made https://www.cqc.org.uk/publications/evaluation/special-measures-one-year (Archived here): mortality rates are shown in Table 2 on page 12, which also shows the HSMRs from Dr Foster.
[D] Dr Foster case study of how Sherwood Forest Hospitals used mortality data from our tool to transform their processes and sepsis care: https://drfoster.com/case-studies/how-sherwood-forest-hospitals-used-dr-foster-data-to-tackle-high-mortality-and-become-an-exemplar-of-improvement/ (Archived here)
[E] Our HS&DR report’s case studies: Appendix 12 has interviews and quotes from hospitals e.g. the first one (p232) had AMI alert and changed its processes despite history of bullying culture [this example is cited above]: Aylin P, Bottle A, Burnett S, Cecil E, Charles KL, Dawson P, D’Lima D, Esmail A, Vincent C, Wilkinson S, Benn J. Evaluation of a national surveillance system for mortality alerts: a mixed-methods study. Health Serv Delivery Res 2018;6(7), doi:10.3310/hsdr06070. Available from URL https://pubmed.ncbi.nlm.nih.gov/29481031/ (Archived here)
[F] Quality Accounts of Oxford University Hospital for 2017/8 and 2018/19: https://www.ouh.nhs.uk/about/publications/documents/quality-account-2018.pdf (Archived here) and https://www.ouh.nhs.uk/about/publications/documents/quality-report-2019.pdf (Archived here)
[G] Dr Foster Limited’s size as a company: https://suite.endole.co.uk/insight/company/03812015-dr-foster-limited gives figures for the year ending June 2019 (Archived here)
[H] Statement by Director of Strategy and Analytics, Dr Foster
[I] Article by the Herald Sun on 27 March 2015 about the purchase of Dr Foster by Telstra.
https://www.heraldsun.com.au/business/breaking-news/telstras-ehealth-push-continues-with-dr-foster-buy/news-story/dd7ffe0eccf0b4bd785247407d413472 (Archived here)
[J] European Healthcare market size estimate by Market Data forecast
(Archived here)
- Submitting institution
- Imperial College of Science, Technology and Medicine
- Unit of assessment
- 10 - Mathematical Sciences
- Summary impact type
- Technological
- Is this case study continued from a case study submitted in 2014?
- No
1. Summary of the impact
Researchers at Imperial have developed a range of mathematical tools and software to address critical nuclear safety issues via ultrasonic non-destructive evaluation (NDE). These new tools enable the rapid inspection of critical nuclear components in confined and challenging environments, e.g. in nuclear submarines, and directly impact upon the safety of personnel and the timeliness and accuracy of inspection with end-users such as Rolls-Royce, Amec (now Jacobs), EDF, BAE Systems and the National Nuclear Laboratory.As noted in [A] “ *The production of component safety justifications requires thousands of man hours that represents millions of pounds of cost. A small benefit provided to this effort will remove significant cost from the submarine enterprise.*” Additionally, driven by industry need, with ultrasonics and metamaterials at the fore, we helped create the UK acoustics network and we describe its impact at DSTL.
2. Underpinning research
Since 2002 Imperial researchers have created a suite of methodologies in wave modelling, oriented around ultrasonic inspection, including novel absorbing layer techniques and hybrid methods for Finite Element (FE) software, efficient techniques for finding wave properties in curved plates, bars and pipes, accelerated FE and imaging techniques, and more recently the analysis of scattering by rough elastic surfaces. There is a well-developed pipeline of theory, modelling, and numerical simulation moving from Imperial to industry, and demand from industry to academia being fed back, through the UK Research Centre in Non-Destructive Evaluation (RCNDE, https://rcnde.ac.uk). A succession of grants [i-iv] under the umbrella of RCNDE have included financial support from industry (Rolls-Royce, Amec now Wood, EDF, BAE Systems and National Nuclear Laboratory).
As noted by the regulator [B], a pressing and challenging issue in the nuclear industry is the characterisation of rough (real) defects; current state-of-the-art is, naturally, over-cautious. We have used our powerful array of techniques to pioneer, in [1,2], the mathematical analysis of scattering by rough elastic surfaces and complemented this by experiments and comprehensive simulation: This was supported by industry through RCNDE projects (sponsors being EDF, NNL, Amec-Wood-Jacobs, BAE Systems and Rolls-Royce). In the words of [C] " The work you have done to enable the prediction of the expected amplitude of reflection, using just the roughness statistics, is transformative" allowing the overly cautious estimates currently in use to be replaced by tighter bounds. [A] describe this as " a step change in the ultrasonic inspection modelling capability available to Rolls-Royce".
Additionally, our work [4] is implemented in DISPERSE - the world leading software modelling tool for guided elastic waves - and in the GPU accelerated FE software, Pogo (also licensed by Imperial Consultants). New theory in [4] addressed a capability gap in DISPERSE, i.e., in dealing reliably with multiple layers each with anisotropy (for modern composites in aerospace), and viscoelasticity (for lossy media); this is now implemented in the latest version of DISPERSE. Interwoven with the above is unique scientific computing capability: Pogo GPU accelerated finite element scheme enables rapid simulation of complex geometries that are out of reach otherwise and this is used in rough surface scattering work [1] and utilised by Rolls-Royce amongst others [6]. We have developed further our hybrid methodology moving to incorporate new numerical schemes [5] and to enable our industry partners to better utilise it. Our research has also led to the development of elastic metasurfaces [3] that take advantage of ultrasonics.
Taken together this comprehensive range and breadth of ultrasonic modelling is widely used in the NDE industry to investigate complex scattering scenarios [A, C]; the nuclear regulator notes our effectiveness in directly addressing topics of direct interest to the nuclear industry [B]. In terms of wave modelling in ultrasonics for elastic waves the UK is undoubtedly in a world-leading position in part as a result of the theoretical underpinning provided by the Mathematics grouping.
3. References to the research
[1] S. Haslinger, F. Shi, P. Huthwaite, R. V. Craster and M. J. S. Lowe, “Appraising Kirchhoff approximation theory for the scattering of elastic shear waves by randomly rough defects” Journal of Sound and Vibration 460, 114872, 2019, doi:10.1016/j.jsv.2019.114872.
[2] F. Shi, M.J.S. Lowe and R.V. Craster, ``Recovery of correlation function of internal random rough surfaces from diffusely scattered elastic waves'', J. Mech. Phys. Solids, 99, 483--494, 2016, doi:10.1016/j.jmps.2016.11.003.
[3] A. Colombi, V. Ageeva, R. J. Smith, A. Clare, R. Patel, M. Clark, D. Colquitt, P. Roux, S. Guenneau, R. V Craster, "Enhanced sensing and conversion of ultrasonic Rayleigh waves by elastic metasurfaces" Scientific Reports, 7, 1-9, 2017, doi:10.1038/s41598-017-07151-6.
[4] F. Hernando Quintanilla, M. J. S. Lowe and R. V. Craster, ``Full 3D Dispersion Curve Solutions for Guided Waves in Generally Anisotropic Media'', J. Sound Vib., 363, 545--559, 2015, doi:10.1016/j.jsv.2015.10.017.
[5] W. Choi, E. A. Skelton, J. Pettit, M. J. S. Lowe and R. V. Craster ``A generic hybrid model: Three-dimensional bulk elastodynamics in non-destructive evaluation'', IEEE Trans. Ultrasonics, Ferroelectrics and Frequency Control 63, 726--736, 2016, doi:10.1109/TUFFC.2016.2535369.
[6] J. R. Pettit, A. E. Walker and M. J. S. Lowe "Improved detection of rough defects for ultrasonic nondestructive evaluation inspections based on finite element modeling of elastic wave scattering" IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control 62, 1797 - 1808, 2015, doi:10.1109/TUFFC.2015.007140.
Grant support:
[i] Rolls-Royce and MoD direct funding of research programme in Mech Eng (P Cawley, M Lowe), to develop ultrasonic inspection methods for nuclear plant components. Total £2M over period 2004-2011
[ii] M. Lowe and R. Craster Modelling of ultrasonic response from rough cracks: EPSRC EP/I018948/1 01/01/2011-31/12/2013 (EPSRC 292K + 90K Industrial) project partners EDF and Rolls-Royce Plc
[iii] 2011-2014 EU Project SIMPOSIUM €5.99million administered by CEA Labs, Saclay http://www.simposium.eu/
[iv] M. Lowe and R. Craster Stochastic ultrasonic scattering from the tips of rough cracks EPSRC EP/P01951X/1 01/04/2017-31/3/2020 415K project partners Amec Foster Wheeler, BAE Systems, EDF, National Nuclear Laboratory and Rolls-Royce Plc
[v] K. Horoshenkov and R. Craster, UK Acoustics Network, EPSRC EP/R005001/1 561k (13 industry partners). 06/11/2017-31/03/2021 and UK Acoustics Network Plus, EPSRC EP/V007866/1 1.4M (36 industry and external partners contribute additional 1.1M). 01/11/2020-31/10/2024
[vi] R. Craster (PI) plus 8 Co-I EPSRC EP/L024926/1 Programme Grant: Mathematical fundamentals of Metamaterials for multiscale Physics and Mechanics. 2.55M EPSRC + 0.7M Industry Sponsors. 30/07/2014-31/01/2020
4. Details of the impact
Our work directly impacts upon civilian nuclear inspections and safety as evidenced in [C]; it also impacts the UK nuclear deterrent by ensuring that the UK submarine capability remains safe and available for operation; it ensures the health and safety of personnel; and by delivering improved estimates for component lifetimes and defect characterisation yields savings in inspection development costs [C, A]. Focussing in on improving the inspection capability for critical components, that are hard to access in confined space, has provided substantial cost savings [A]. These advances also have broad reach and significance as many of the UK, and international, nuclear facilities are ageing and the accurate inspection of difficult to access components is critical to ensuring that they continue to operate safely [B].
Underpinned by the research funded in [i-iv] we developed the first characterisation of scattering by rough cracks within reactor pipework -- previous algorithms assume smooth flat cracks and generate overly cautious estimates. Our work revises these estimates and is implemented by our industry partners [6, A, C].
EDF Energy and Rolls-Royce Submarines
Both Rolls-Royce Submarines and EDF actively deploy the Finite Element Method for modelling of ultrasonic wave-defect interaction [A,C,i,iv,6], aiming to provide a capability to model the reflection of ultrasonic waves from small and geometrically complex flaws typical of the types found in nuclear plants due to manufacturing, fatigue, or service [A, C]. Both Rolls-Royce and EDF highlight the cost-savings associated with accurate simulation versus the " notoriously expensive" standard approaches and that simulation is " invaluable", " as it allowed small regions of a component to be modelled using the FEM without wasting computing resources on unnecessary and currently un-solvable models" [A]. The economic benefits to Rolls-Royce and EDF are most keenly felt as cost savings as " The production of component safety justifications requires thousands of man hours that represents millions of pounds of cost. A small benefit provided to this effort will remove significant cost from the submarine enterprise" [A].
Our impact draws upon a suite of specialised software some of which is commercialised: DISPERSE software is used by [redacted from public version] different organisations/companies and we evidence its impact via [D] where Disperse is a key capability underpinning the R&D development of that company. Additionally, our hybrid method is now standard in industry partners as evidenced in [A]; this has facilitated Pogo a finite element solver designed for GPU computation.
Software
the latest version of software DISPERSE contains the algorithms in [4]. DISPERSE is licensed by Imperial College Consultants. Since 2013, [redacted from public version] different companies/ organisations purchased licences, across [redacted from public version] countries, generating a revenue of [redacted from public version] [E].
Customers include [redacted from public version] [E].
The hybrid [5] method we developed with sponsorship from Rolls-Royce, Amec now Wood, EDF, BAE Systems and National Nuclear Laboratory is now a standard tool for these sponsors and other industry partners. [A, C].
Pogo is a high-speed finite element package for ultrasound simulation that we have combined with the hybrid method [1,2]. This combination of PoGo/Hybrid method is now used internationally by industries operating in nuclear, oil and gas, and to [redacted from public version] for space exploration. Since 2017, [redacted from public version] licences have been supplied, with [redacted from public version] of these to private companies and [redacted from public version] to universities giving a total revenue of [redacted from public version] [E].
Acoustics Network
The industry-academic relationships we built in NDE/ultrasonics [iv], and in metamaterials [3, vi], led, through workshops and community events, directly to the EPSRC UK Acoustics Network [G] (RVC is Co-Director). Starting in Nov 2017 UKAN has rapidly grown to >1200 members (500+ from industry) and extended to an EPSRC Network Plus [v], with significant industry input, in 2020; there are special interest groups in both NDE and metamaterials.
This extensive network has broad impact, here we focus on a single exemplar of the impact that UKAN has on training industry staff in one organisation, DSTL [F]. Staff were trained at a UKAN workshop in machine learning (ML) for acoustics and “ *Dstl has been able to use its new expertise in ML to contribute to a number of high impact projects that support the RN operational advantage in the underwater battlespace.*” UKAN has become “ *an important part of the ecosystem being used by Dstl to maintain and develop internal capability in underwater acoustics.*” DSTL is just one of the many companies and external organisations (including Thales, GlaxoSmithKline, AECOM, DEFRA, Meridian Audio, Precision Acoustics, QinetiQ) that have been actively involved in UKAN. Using its industry connections, the network is actively involved in policy work for acoustics with the report [H] highlighting its value to industry, the economy, and society.
5. Sources to corroborate the impact
[A] Letter from Head of NDE at Rolls Royce Submarines Ltd
[B] Letter from Principal Inspector for Nuclear Safety at the Office for Nuclear Regulation
[C] Letter from Specialist Engineer at EDF Energy Nuclear Generation Ltd
[D] Letter from CEO at Guided Ultrasonics Ltd
[E] Letter from Imperial Consultants Ltd
[F] Letter from Senior Principal Scientist at DSTL Porton Down
[G] UK Acoustics Network weblink www.acoustics.ac.uk (Archived here)
[H] Sound Economics report. Authors, J. Lincoln, RVC, K. Horoshenkov https://acoustics.ac.uk/?resources=acoustics-sound-economy-the-value-of-acoustics-report (Archived here)
- Submitting institution
- Imperial College of Science, Technology and Medicine
- Unit of assessment
- 10 - Mathematical Sciences
- Summary impact type
- Health
- Is this case study continued from a case study submitted in 2014?
- No
1. Summary of the impact
The World Health Organisation (WHO) recently listed vaccine confidence as a top-ten global threat (WHO Global Threats 2019). Imperial research on vaccine coverage and confidence directly led to changes in national vaccine policy, resulting in increased vaccinations and reduced levels of infection. Consequent on NJ/AF’s 2016 research, the Wellcome Trust and the EU commissioned, in collaboration with the team, influential world-wide and European surveys (2018, 2019). Further, the WHO commissioned NJ/AF in 2019 to improve their vaccine coverage analytic and predictive methodologies. NJ/AF’s work, presented to a French Commission in 2016, and appearing in its report, directly influenced the French health minister to increase the number of state-required vaccines in France (which came bottom in the team’s estimate of its level of safety-trust in 2016). The number of state-required vaccines consequently more than tripled after 2017: in 2018 alone, this led to >350,000 additional vaccinations and significant drops in infections, notably an 83% drop in invasive meningococcal infections in infants.
2. Underpinning research
Context: NJ’s research group, in the Department of Mathematics at Imperial, has investigated vaccine coverage and confidence since 2014, in collaboration with anthropologists in the London School of Hygiene and Tropical Medicine (Prof Heidi Larson). Mathematically, this research is an adjunct to NJ’s work on spreading, inference and influence on social graphs. Vaccine coverage is the proportion of individuals that should be vaccinated that are, in fact, vaccinated. Vaccine confidence indicates the level of trust in vaccine importance, safety and efficacy; hence it captures the reluctance or refusal to be vaccinated despite the availability of vaccines. A lack of vaccine coverage can then be attributed to the combination of vaccine availability and the level of vaccine confidence. NJ and AF have contributed significantly to the quantification of both vaccine coverage and vaccine confidence.
Work on Vaccine Coverage: NJ/AF developed an analysis of factors underpinning international variations in vaccine coverage and then combined this with Gaussian-Process based forecasts of future vaccine coverage [1]. Due to this work, NJ/AF were commissioned by the WHO in 2019 to update their vaccine coverage analytics. Using a Bayesian hierarchical framework and Gaussian Processes, AF/NJ have extended the WHO’s existing platform to allow coverage forecasting and inferences for countries with missing or sparse data [2].
Work on Vaccine Confidence: The work on vaccine coverage [1] led on to work on vaccine confidence. In [3], NJ/AF analysed a large-scale survey on international vaccine confidence that their team collected. In addition to carrying out a large part of the interpretation of the data, NJ/AF studied covariation between responses and developed a hierarchical model to link personal and country-level predictors to survey responses. This model highlighted several actionable points; in particular, the ambiguous role that education has on improving vaccine confidence, where countries with a higher mean level of education have more negative vaccine sentiments, and the fact that gender has a mild role on vaccine safety confidence. Both factors were discussed by the French consultation ‘Concertation Citoyenne sur la Vaccination’ (see below).
The paper [3] led the EU (Directorate General for Health and Food Safety) and the Wellcome Trust to commission EU and worldwide surveys, respectively. AF influenced the survey design, which followed on the design developed in [3] and carried out the analysis of these surveys while he was a Research Fellow in the EPSRC Centre for the Mathematics of Precision Healthcare (NJ – co-I). This work led to an EU report [4] which used a similar analysis as in [3]. Further, AF has produced a recent Lancet paper presenting the Wellcome Trust survey [5] which extends the statistical methodology used in [2] by incorporating multinomial logit Gaussian Processes.
3. References to the research
[1] de Figueiredo A, Johnston IG, Smith DM, Agarwal S, Larson HJ, Jones NS, 2016, Forecasted trends in vaccination coverage and correlations with socioeconomic factors: a global time-series analysis over 30 years. Lancet Global Health. 4:e726-e735, doi:10.1016/S2214-109X(16)30167-X.
[2] de Figueiredo A, Jones NS, 2020, Gaussian Process Estimates of National Immunisation Coverage. WHO internal report.
[3] Larson HJ, de Figueiredo A, Xiahong Z, Schulz WS, Verger P, Johnston IG, Cook AR, Jones NS, 2016, The State of Vaccine Confidence 2016: Global Insights Through a 67-Country Survey. EBioMedicine. 12:295-301, doi: 10.1016/j.ebiom.2016.08.042.
[4] Larson HJ, de Figueiredo A, Karafillakis E, Rawal M, 2018, The State of Vaccine Confidence in the EU 2018. https://ec.europa.eu/health/sites/health/files/vaccination/docs/2018_vaccine_confidence_en.pdf
[5] de Figueiredo A, Simas C, Karafillakis E, Patterson P, Larson HJ, 2020, Mapping global trends in vaccine confidence and investigating barriers to vaccine uptake: a large-scale retrospective temporal modelling study. Lancet. 396:898-908, doi:10.1016/S0140-6736(20)31558-0.
4. Details of the impact
Impact in France:
The work of NJ/AF in [3] led to a member of their team being called before a French national commission (the ‘ Concertation Citoyenne sur la Vaccination’, see below) [A] to report their findings. Combined with press coverage of [3], this testimony led to the commission issuing a report that resulted in the French Ministry of Health substantially increasing the number of state-required vaccinations and so markedly reducing numbers of infections.
In September/October 2016, there was a ‘ Concertation Citoyenne sur la Vaccination’ in France (initiated by the health minister). This citizen consultation had two committees: one composed of medics and the other composed of the public. Heidi Larson, the joint first author (with AF -- Imperial) of [3], was called as a witness (8 Sept 2016) to the medical committee and presented the team’s results one day before they were released online. The transcript of this extensive presentation can be found in [A, p262-268] of which the below is an excerpt:
“Madame LARSON –…the timing is very good ... tomorrow we will be releasing an e-biomedicine in 67 countries on vaccine confidence. You are the headlines. … France … was, not by a small margin, the absolute least confident country in vaccine, particularly safety, but also its effectiveness. …
*Monsieur FISCHER, President. - Thank you very much, this was really a performance. A lot of information, not good for us, but, at least, it is a further reinforcement that the work of our group is more than needed. There is a lot to do everywhere in the world, but, unfortunately mostly in France.*”
The (medical) committee then went on to discuss details of the breakdown of opinions expressed by survey respondents in [3], including by gender, and asked for the analysis in NJ/AF’s paper itself. (See [A] p268).
Paper [3] was subsequently reported on in two articles in Le Monde [B], had coverage in La Tribune, and remains heavily referenced in the French (Le Monde, L’Express) and international media [J].
The report produced by the French commission, “Rapport sur la Vaccination” (30/11/2016 **[C]**) cites paper [3] in its opening paragraphs (p5), in particular stressing the high levels (41%) of vaccine hesitancy (i.e., low confidence) in France. In fact, the majority of the document covers vaccine confidence (rather than merely vaccine coverage). The consultation recommended that all childhood vaccinations be made mandatory (state-required).
On 5 July 2017, the French Health Minister announced the extension of mandatory vaccination, explicitly citing the consultation [D]. Refs [E, F] explain how the minister addressed the committee's principal recommendation (i.e., mandatory vaccination) as a direct consequence of report [C]. A recent analysis [G] of the effects of this mandatory vaccination (which cites paper [3] and its follow-up for the EU **[4]**) stated:
“…the extension of vaccination mandates on vaccination coverage is encouraging. It shows an increase in VC [Vaccine Coverage] of infants concerned by the extension of the vaccination mandates … vaccine coverage for the first dose of meningococcal C vaccine increased from 39.3% to 75.7% ... This sharp increase in MenC VC translated into a dramatic decrease in the number of invasive MenC disease cases notified in infants through the mandatory notification system”
Ref. [4] further notes that the number of invasive Meningococcal infections dropped six-fold in one year: from 3 per 100,000 (infants <1 year) in 2017 to 0.5 in 2018. MMR vaccine coverage levels increased by 3% in 2017/18 (MMR is a key vaccine for public health and target for concerns regarding vaccine safety). The number of HPV vaccines paid for increased by ~120,000 from 2016/17 to 2018 (from ~30,000 to ~40,000 per month).
NJ/AF’s work thus directly led to changes in French Vaccination policy, in vaccines delivered, and in infections averted. After French steps to increase mandatory vaccination, Germany recently passed a law that made measles vaccinations mandatory from March 2020 [H].
Impact on WHO:
NJ/AF’s track record on vaccine analytics enabled them to win support to improve the WHO’s reporting of coverage [2]. As a consequence of their efforts the WHO are developing probabilistic estimates of coverage [I]. WHO vaccine coverage estimates are highly significant since institutions like the Gates Foundation and GAVI tie their financial aid to WHO estimates of coverage levels.
Impact on EU and Wellcome Trust:
Consequent on paper [3], both the European Commission and Wellcome Trust commissioned large-scale surveys of the EU and World, respectively. These new surveys used the survey questions from the eBioMedicine paper [3] and sought to track progress from 2016. The vaccination part of the Wellcome Trust survey generated widespread media attention in its own right. Released in June 2019, it was picked up across the world (BBC/Reuters/CNN/Nature/ Science and [5] is in the top 1000 of papers scored by Altmetric out of 17M).
Media Impact:
AF has shown that vaccine confidence has recently rebounded in France, with a ~25% increase in the number of French respondents strongly agreeing in vaccine safety (2015 survey compared to 2019 survey) [5]. Beyond influencing perceptions in France the work of NJ/AF [1,3-5] has impacted global awareness of vaccine confidence as a key issue and hence the need to tackle confidence: the research has been covered in >200 press articles in over 130 media outlets worldwide including: UK (Financial Times, Daily Mail, BBC), US (Newsweek, NYT), and European (Le Monde, El Confidencial) news, TV and Radio news (Al Jazeera, Europe 1, CNN, Fox, NPR), and online venues like Vox and The Conversation. It has also been reported widely in the generalist science journals Science, The Lancet and Nature (appearing in 1 world-view, 1 feature, 3 perspectives, 2 news items), and popular science magazines (Scientific American, New Scientist). Paper [3] is in the top ~0.01% of all papers scored all-time by Altmetric [J]. With its nearly 500 citations, NJ/AF’s work is now used when people appeal to international challenges with both vaccine confidence and coverage.
5. Sources to corroborate the impact
[A] Transcript from Concertation Citoyenne sur la Vaccination (Quote is from p262) http://concertation-vaccination.fr/wp-content/uploads/2016/04/Annexes-rapport-CCV.pdf (Archived here)
[B] French press coverage in Le Monde https://www.lemonde.fr/medecine/article/2016/09/09/scandales-sanitaires-controverses-les-raisons-de-la-defiance-en-france-contre-les-vaccins_4995062_1650718.html (Archived here)
https://www.lemonde.fr/sante/article/2016/09/09/plus-de-quatre-francais-sur-dix-estiment-que-les-vaccins-ne-sont-pas-surs_4994856_1651302.html (Archived here)
[C] The report produced by the French commission, “Rapport sur la Vaccination” http://concertation-vaccination.fr/wp-content/uploads/2016/04/Rapport-de-la-concertation-citoyenne-sur-la-vaccination.pdf Larson et al. 2016 paper is cited on page 5 of the report. (Archived here)
[D] The French Health Minister announcement of the extension of mandatory vaccination https://solidarites-sante.gouv.fr/actualites/presse/communiques-de-presse/article/a-partir-de-2018-les-enfants-de-moins-de-deux-ans-devront-etre-vaccines-contre (Archived here) and https://solidarites-sante.gouv.fr/actualites/presse/discours/article/discours-d-agnes-buzyn-relatif-a-la-vaccination-obligatoire-le-5-juillet-2017 (Archived here)
[E] Lévy-Bruhl D, Desenclos JC, Quelet S, Bourdillon F., 2018, Extension of French vaccination mandates: from the recommendation of the Steering Committee of the Citizen Consultation on Vaccination to the law. Eurosurveillance. 26;23 (Archived here)
[F] Ward JK, Colgrove J, Verger P, 2018, Why France is making eight new vaccines mandatory. Vaccine. 36(14):1801-3. (Archived here)
[G] Lévy-Bruhl, D, Fonteneau, L, Vaux, S, Barret, AS, Antona, D, Bonmarin, I, Che, D, Quelet, S and Coignard, B, 2019, Assessment of the impact of the extension of vaccination mandates on vaccine coverage after 1 year, France. Eurosurveillance, 24;26. (Archived here)
[H] Torjesen, I. German parliament votes to make measles vaccination mandatory. BMJ. 2019 367:l6558 (Archived here)
[I] Letter of support – Scientist, Strategic Information Group, WHO.
[J] Combined evidence for global press coverage of Paper [3] https://dimensions.altmetric.com/details/11977011 and Paper [5] https://dimensions.altmetric.com/details/89829172 (Archived here)