Skip to main

Impact case study database

The impact case study database allows you to browse and search for impact case studies submitted to the REF 2021. Use the search and filters below to find the impact case studies you are looking for.

Search and filter

Filter by

  • The University of East Anglia
   None selected
  • 5 - Biological Sciences
   None selected
   None selected
   None selected
   None selected
   None selected
   None selected
Waiting for server
Download currently selected sections for currently selected case studies (spreadsheet) (generating)
Download currently selected case study PDFs (zip) (generating)
Download tags for the currently selected case studies (spreadsheet) (generating)
Currently displaying text from case study section
Showing impact case studies 1 to 6 of 6
Submitting institution
The University of East Anglia
Unit of assessment
5 - Biological Sciences
Summary impact type
Technological
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

Phytate in animal feed impairs the growth and sustainable production of poultry. Consequently, phytases - enzymes that degrade phytate - are added to 95% of commercial poultry feeds across the globe. Brearley’s research on how phytases affect phytates has impacted the animal feed industry on a global scale. This has been achieved by direct intervention and via knowledge transfer to AB Vista, a UK animal nutrition technology company. Brearley’s research has changed AB Vista’s R&D strategy, know-how, marketing behaviour and technology adoption, enabling AB Vista to become one of the three largest animal feed enzyme suppliers in the world. Overall, this impact and its knock-on effects have benefited an industry sector producing more than 10 billion chickens per year - approximately 17% of global production – in a multibillion-dollar enzyme market.

2. Underpinning research

Embedded image Phytate, a component of animal feed, is a potent anti-nutrient that is estimated to cost the global poultry industry USD2,000,000,000 (05-2014) per year in lost growth performance. Feed supplements that contain phytases aid digestive degradation of phytate, improve mineral, protein and amino acid digestibility, and release phosphate, which is essential for bone development. They therefore strongly improve animal growth.

Since the first commercial phytase was released to market in the late 1990s, phytases have become essential components of commercial poultry and pig feeds. However, until 2014, the benefits of phytase to poultry growth performance were thought to lie predominantly with degradation of phytate, also known as inositol hexakisphosphate, to lower inositol phosphates. This interpretation came from animal feed trials in which growth performance was enhanced by phytase. But, at that point, few studies had considered the detailed mechanism of phytate degradation or its interaction with animal performance.

Elucidating the mechanism of phytase (Quantum Blue) action in partnership with AB Vista: In 2012, AB Vista's Research Director and team approached Brearley to contract him to conduct consultancy/contract research with the purpose of providing scientific guidance and a mechanistic explanation for the company's dosing strategy when including phytase in poultry feeds. They also invited him to give a Plenary Talk at the AB Vista-sponsored 2nd Phytase Summit. AB Vista sought to access Brearley’s recognised expertise in inositol phosphate and phytase research [R1, R2] because AB Vista lacked the expertise to undertake analysis of inositol phosphates themselves. The specific questions for which answers were sought were: in what part of the digestive tract does phytate digestion occur, how is this affected by phytase dose, and how does growth performance of monogastric animals (poultry and pig) correlate with individual inositol phosphates produced in different parts of the gut? AB Vista's approach was timely because the company had just launched its new phytase product Quantum Blue, and Brearley had developed 2d-HPLC (High Performance Liquid Chromatography) pulsed amperometry methods suitable for measurement of inositol, the ultimate product of degradation of phytate (research later published as [R3]). At the time, the industry had noticed that incremental increases in animal performance could be obtained by increasing doses of phytase. These increases surpassed those attainable by supplementation of diet with phosphate. These so-called "extra-phosphoric" effects became known as "Superdosing", a term coined by AB Vista (Walk CL et al. 2013. Poultry Science 92: 719-725. DOI: 10.3382/ps.2012-02727), even if the explanation for how exactly they worked eluded the industry.

The role of inositol: Since 2013, Brearley has worked with AB Vista on its Quantum Blue product to determine the optimal dosing regimen of phytase for animal production. Brearley recognised and reported to AB Vista that the real value of Superdosing was likely to stem from the release of inositol, historically considered a vitamin. He confirmed this, providing AB Vista with analytical data that were published by the company as their first report of the effect of Superdosing with phytase (Quantum Blue) on measured inositol release and its correlation with growth performance in poultry [S2]. Brearley also led the development of robust, sensitive methods of measurement of inositol phosphates (isomers) and inositol. These have been applied to feed trials of standard and Superdoses of phytase, using samples of feed and gut contents from different parts of the gastrointestinal tract. The work has been funded directly by AB Vista [Grant A] and by a joint BBSRC grant with AB Vista [Grant B].

Global developments of the Brearley/AB Vista partnership: The shift in attention from inositol phosphates and phosphate release to inositol as an explanation of Superdosing efficacy has been transformative for AB Vista. For example, because Brearley further refined his methods, making them suitable for measurement of inositol in plasma [R3] and animal tissue [R4, R5], AB Vista commissioned additional feed trials conducted by other contractors on four continents. These trials collected plasma and tissue samples from poultry and pigs (beside feed and digesta) for inositol analysis by Brearley under contract to AB Vista [R3, R5; S1].

Brearley also partnered the wider AB Vista group (AB Enzymes, Germany, and Roal Oy, Finland) with BBSRC in pursuit of next-generation phytases [Grant C]. This project arose directly from Brearley’s earlier discovery of a new class of phytase [R2] and led to a PhD studentship funded by AB Vista, one of six PhD studentships supervised by Brearley with funding solely from AB Vista or from AB Vista jointly with BBSRC or NERC [S1]. Overall, Brearley’s research is reported in more than twenty research outputs with AB Vista authors or co-authors (including [R4-R6]; see also [S1-S3]). This body of work has further provided valuable information to AB Vista and the wider poultry industry on the relationship of inositol to the causes of two muscle diseases of chicken, "Woody Breast" and "White Striping" [R5]. These pathologies are responsible for losses of more than USD200,000,000 (10-2017) per year to the poultry industry in the USA. The role of phytase and inositol release in the amelioration of these pathologies are, as a result of Brearley’s research, subjects of intense current interest within AB Vista [S1] and other feed companies.

Image: Broiler chicken and inositol molecule; Credit: chicken: Creative Commons 4.0 BY-NC, http://pngimg.com/imgs/animals/chicken/; molecule – Charles Brearley.

3. References to the research

Underpinning research: The underpinning research is published in competitive, international, peer-reviewed multidisciplinary or discipline-specific journals (citation numbers are from Google Scholar; UEA author names are in bold; **industry co-author):

  1. Lemtiri-Chlieh F, MacRobbie EAC, Webb AAR, Manison NF, Brownlee C, Skepper JN, Chen J, Prestwich GD, Brearley CA ( 2003) Inositol hexakisphosphate mobilizes and endomembrane store of calcium in guard cells. Proceedings of the National Academy of Sciences 100: 10091-10095. DOI: 10.1073/pnas.1133289100 [280 citations]

  2. Stentz R, Osborne S, Horn, N, Li AWH, Hautefort I, Bongaerts R, Rouyer M, Bailey P, Shears SB, Hemmings AM, Brearley CA, Carding SR (2014) A bacterial homolog of a eukaryotic inositol phosphate signalling enzyme mediates cross-kingdom dialog in the mammalian gut. Cell Reports 6: 646-656. DOI: 10.1016/j.celrep.2014.01.021 [52 citations]

  3. Pirgozliev, V, Brearley CA, Rose SP, Mansbridge SC ( 2019) Manipulation of plasma myo-inositol in broiler chickens: effect on growth performance, dietary energy, nutrient availability, and hepatic function. Poultry Science 98: 260–268. DOI: 10.3382/ps/pey341 [5 citations]

  4. Lu H, Kühn I**, Bedford M**, Whitfield H, Brearley C, Adeola O, Ajuwon KM ( 2019) Effect of phytase on intestinal phytate breakdown, plasma inositol concentrations and glucose transporter type 4 abundance in muscle membranes of weanling pigs. Journal of Animal Science 97: 3907-3919. DOI: 10.1093/jas/skz234 [6 citations]

  5. Greene ES, Flees J, Dadgar S, Mallmann B, Orlowski S, Rajaram N, Rochell SJ, Kidd M, Laurendon C, Whitfield H, Brearley C, Walk C**, Dridi S ( 2019) Quantum blue reduces the severity of Woody Breast myopathy via modulation of oxygen homeostasis-related genes in broiler chickens. Frontiers in Physiology. 10: 1251. DOI: 10.3389/fphys.2019.01251 [10 citations]

  6. Acquistapace IM, Ziętek MA, Li AWH, Salmon M, Kühn I**, Bedford MR**, Brearley CA, Hemmings AM ( 2020) Snapshots during the catalytic cycle of a histidine acid phytase reveal an induced fit structural mechanism. Journal of Biological Chemistry (published online ahead of print) DOI: 10.1074/jbc.RA120.015925

Funding: Funding for the underpinning research was obtained from industrial and UKRI Research Council sources. Direct funding was provided by AB Vista [Grant A]. AB Vista also contributed financially to the competitive, peer-reviewed grants obtained from BBSRC, namely a LINK Award [Grant B] and an Industrial Partnership Award [Grant C]: Grant A: PI: CA Brearley. Title: Phytate Analysis. Funder: AB Vista. Dates: January 2013 – December 2020. Value: GBP814,100. Grant B: PI: CA Brearley. Title: Phytases beyond phosphate, how inositol improves feed conversion ratio in poultry. Funder: BBSRC LINK Award. Dates: 27 June 2016 – 26 November 2018. Value: GBP188,506. AB Vista contribution GBP90,000. Grant C: PI: A Hemmings (UEA); Co-I: CA Brearley. Title: Mapping the catalytic landscape of a novel phytase. Funder: BBSRC Industrial Partnership Award. Dates: 30 September 2015 – 29 June 2019. Value: GBP459,551. AB Enzymes/AB Vista contribution GBP96,000.

4. Details of the impact

Brearley's research has had impacts on commerce, the economy and production, both directly and via knowledge transfer. The beneficiaries are commercial animal feed businesses on a global scale, specifically AB Vista and its partner companies, AB Enzymes, Germany, and Roal Oy, Finland, who produce the Quantum Blue enzyme. His research has also benefited other enzyme companies and the global poultry industry (both producers and nutritionists). As illustration, because of Brearley’s work with AB Vista, the term "Superdosing" has come to convey the benefits arising from provision of inositol through adding phytase to animal feed. As such, it has been accepted as a standard term in academia and industry, with more than 570 citations in Google Scholar since 2013.

Change in industry R&D strategy: Brearley’s research [R3-R6] and his collaboration with AB Vista [S1] have driven a key change in AB Vista's R&D strategy. This has involved the company shifting its R&D focus towards understanding the role of inositol [S1-S3], as evidenced by: AB Vista’s funding of Brearley’s consultancy contract [Grant A]; the company’s collaboration with Brearley in obtaining BBSRC LINK and Industrial Partnership Award funding [Grants B, C]; and the company’s funding of multiple PhD studentships both at UEA and internationally [S1]. In addition, AB Vista has commissioned research feed trials in 15 countries across four continents (e.g. Australia, India, USA, Germany, UK), from which it has sent samples to Brearley at UEA for analysis of inositol phosphate and inositol products of phytate degradation [R3-R5; S1-S2]. Overall, the involvement of Brearley has been a disruptive innovation for the industry's R&D. As AB Vista's Research Director stated, “By providing us with a first set of measurements of inositol in a digestive setting, something we had not considered ourselves, Charles opened up a new research area across the animal feed industry. This has been very significant for AB Vista and the industry as a whole” [S1].

Change in industry know-how: The metadata arising from analysis by Brearley of more than 10,000 samples from the AB Vista-commissioned feed trials have, by providing essential scientific underpinning, reshaped AB Vista's understanding of the Quantum Blue phytase and the benefits to be gained by Superdosing. To quote AB Vista's Research Director [S1], “Charles’ work on inositol and Superdosing has allowed us to progress from an understanding of the correlation of animal growth performance to inositol phosphate release, in different parts of the gut, to a sophisticated understanding of the extent of animal growth performance attributable to inositol” [S1].

Change in industry behaviour: marketing: AB Vista’s guidance on dosing of Quantum Blue has also been changed. The guidance to customers covers the range of poultry-raising regimes used worldwide for all the chickens (over 10,000,000,000 birds) fed AB Vista’s phytase products. “Our advertising strategy includes evidence generated by UEA showing that our products function at the intestinal level better than all other phytases, and the data generated enables us to explain why superdosing, for example, works in poultry and swine from a mechanistic viewpoint” (AB Vista's Research Director [S1]). Brearley’s data are also reported across AB Vista’s web pages [S3].

Change in industry behaviour: technology adoption and knowledge transfer: Brearley’s interaction with AB Vista has led to the company adopting his analytical methods. To quote AB Vista's Research Director [S1] “His analytical expertise with inositol phosphates and inositol has provided a route to analysis that was not available to us before on a scale relevant to our needs. In order to be able to respond rapidly to industry needs, we are now investing heavily in Charles’ methodologies in our analytical services division in the UK”. Separately, Brearley has provided training in analytical methods to AB Enzymes (a market leader as reflected in their turnover exceeding USD112,000,000 (08/2019)), partner on Grants A-C. This allowed for new methods to be adopted by the R&D department of AB Enzymes and in turn led to AB Enzymes testing novel applications of Quantum Blue [S4]. In addition, Brearley has transferred data on novel phytases for further investigation to Roal Oy, partner via AB Vista on Grant C.

Company success: The changes in R&D, know-how and marketing, all arising from the new understanding of AB Vista’s Quantum Blue phytase provided by Brearley's research, have enabled AB Vista to sell more of its product. This has been achieved by advertisement of the efficiency of Quantum Blue in degrading phytate and releasing inositol [S3]: “The credibility that UEA research brings to our products means that customers who are at the forefront of technology are far more likely to buy from us, …Charles’ analysis of inositol phosphates and inositol, his further development of methods suitable for tissues and organs and his interaction with our other academic partners contributes to our literature, presentations and conferences, informing existing customers regarding their use of our products, and keeping them abreast of technological developments” (AB Vista's Research Director [S1]). Brearley’s research has therefore been central to AB Vista’s growth to become a top three supplier of phytase [S1, S5], in a market projected to exceed USD2,000,000,000 (11-2019) by 2024. “I can confirm that the research undertaken at UEA has enabled AB Vista to move from being the 6-7th largest enzyme supplier in the world to number 2-3 in the last seven years” (AB Vista's Research Director [S1]).

Benefiting the global poultry and pig industry: The impact of Brearley’s work extends beyond AB Vista to its customers and competitors in the poultry and pig sectors. For example, industry-wide adoption of Superdosing and the contribution of inositol to this technique is evidenced in a competitor’s 2017 marketing presentation, which stated, ‘ Use of Ronozyme® HiPhos increases blood levels of myo-inositol by a quick break-down of phytate in the gut’ [S6]. Moreover, phytase sales benefit customers as well as producers. AB Vista’s Global Sales Director has quantified the value of phytate degradation to customers, " Estimates suggest the anti-nutritional effects of phytate could be costing the industry as much as €2 billion [EUR2,000,000,000 (05/2014)] per year in lost performance, and that the potential still to be captured from near-complete phytate destruction is as high as €5 [EUR5.00 (05-2014)] per tonne of feed manufactured” [S7] . Lastly, Brearley's research on the role of inositol in the aetiology of two muscle diseases in chicken, "Woody Breast" and "White Striping" [R5], hold potential for substantial future benefits to the industry. As AB Vista's Research Director has stated of Brearley's presentation of this work to an industry conference in Taiwan in 2019, "The event in Taiwan helped more than one hundred participants… The sales increment could be substantial if we find that dosing two to three times higher than current 'superdosing' norms prove beneficial" [S1].

5. Sources to corroborate the impact

  1. Letter from the Research Director, AB Vista (30.12.20).

  2. Walk CL, Santos TT, Bedford MR (2014) Influence of superdoses of a novel microbial phytase on growth performance, tibia ash, and gizzard phytate and inositol in young broilers. Poultry Science 93: 1172-1177. DOI: 10.3382/ps.2013-03571 [This article is AB Vista’s first report of the contribution of inositol release to the efficacy of Superdosing, as referred to in S1's paragraph 3, line 7, sentence beginning, "By providing us…".]

  3. AB Vista website and marketing materials: A Superdosing infographic from AB Vista from abvista.com (accessed 21.11.20). [The use of Brearley’s data in AB Vista’s marketing materials is referred to in S1's paragraph 4, line 5, sentence beginning, “Charles’ analysis of …”.]

  4. Research Scientist, AB Vista, partner company AB Enzymes.

  5. Feed industry assessment of AB Vista market position; article from globenewswire.com, 2019 (accessed 21.11.20). [Paragraph 6: Quantum Blue has helped AB Vista become second in world.]

  6. Marketing presentation by the enzyme company DSM; DSM/Novozymes Enzyme School from dsm-feedback.dk, 1-2.3.17 (accessed 21.11.20). [Quote is on slide 7.]

  7. AB Vista press release; AB Vista’s Quantum Blue: Revolutionary New Phytase from thepoultrysite.com, 16.5.14 (accessed 21.11.20). [Quote is from paragraph 3.]

Submitting institution
The University of East Anglia
Unit of assessment
5 - Biological Sciences
Summary impact type
Technological
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

Cataract, a clouding of the lens, is a global problem affecting tens of millions of people. Surgery is the only treatment, but it commonly causes secondary blindness due to a wound-healing response. Wormstone and colleagues, as its original inventors, have continuously refined an experimental culture system of the human lens (the capsular bag model) that enables the causes of secondary blindness to be better understood. The enhanced model has generated clinically relevant data more rapidly than clinical trials, enabled product development for artificial lenses and supported product marketing. As a result, Wormstone's research and consultancy have contributed to the recent growth of Singapore-based HOYA Surgical Optics, now the third largest manufacturer within the multibillion-dollar global intraocular lens market. In addition, the model supports practitioners by allowing surgeons to make informed decisions resulting in long-term restoration of vision and benefits patients through a reduced need for follow-up surgery.

2. Underpinning research

Embedded image Cataract surgery involves implanting an artificial lens (intraocular lens) in the affected eye. However, posterior capsule opacification (a clouding behind the intraocular lens) following cataract surgery causes secondary blindness in millions of patients worldwide. In a wound-healing response, residual lens epithelial cells grow on previously cell-free regions within the line of sight and become fibrotic. Additional surgery is required to restore sight once more, causing substantial extra cost to healthcare providers and patients. For example, under Medicare, laser treatment of posterior capsule opacification costs up to USD823 (09-2020), yet it is the second most common operation in the world. So, understanding the biology behind posterior capsule opacification and establishing the capacity of an intraocular lens to suppress it are of great interest to clinicians, the intraocular lens industry and patients. Clinical trials are expensive and time-consuming, while animal models of posterior capsule opacification are not ideal because the mechanisms involved may differ from those in humans. Consequently, a human experimental system to make intraocular lens development more effective and provide better outcomes for patients has been in great demand across the world.

To meet this need, Wormstone and colleagues, including the late George Duncan, invented and developed the human capsular bag model at UEA. Essentially, this involves bench-top cataract surgery on human donor eyes in a laboratory setting. The product of this procedure is an isolated capsular bag (the part of the eye housing the lens). An artificial intraocular lens can be placed within the capsular bag in the same manner as a cataract patient would experience. The capsular bag (with or without an intraocular lens) can be transferred and secured to a culture dish and maintained in a controlled environment. This tissue culture system (the capsular bag model) replicates the spatial organisation and cell composition found in real patients and so allows the features of human posterior capsule opacification to be studied. From 2000 onwards, the team refined this novel culture model through the application of match-paired experiments to discover factors regulating posterior capsule opacification [Grant A]. For example, using the model for inhibition studies, the team identified key autocrine factors such as fibroblast growth factor [R1, Grant A] and vascular endothelial growth factor [R2, Grants A & B]. In addition, the team used the model to allow the influence of external stimuli (that could arise from non-lens sources) to be established, finding that transforming growth factor β mimicked fibrotic changes seen in post-mortem posterior capsule opacification patient samples [R3, Grant A].

Since 2012, in a process of continuous enhancement, Wormstone and team have developed several new and improved variants of the system, which have in turn increased the clinical relevance of the model:

  • Inverted system capsular bag model: The team developed an inverted system such that, unlike in previous versions, the anterior face of the capsular bag was adjacent to the culture dish and the posterior capsule furthest away. This allowed greater interaction between the posterior capsule and intraocular lens and, together with the use of human serum to deliver stimuli (adopted for the first time in this model and then used in all subsequent ones), made the model more reflective of the clinical setting than previous ones [R4, Grant A].

  • Suspended capsular bag model: In this model, developed through collaboration with Prof. David Spalton, St Thomas’ Hospital, London [Grants A & B], the ciliary body (a circular muscle connected to the lens) is pinned to a silicone support ring, so allowing the capsular bag to be suspended over the lumen of the ring. An intraocular lens can be placed in this model, allowing it to interact with the capsule in a manner that is again more clinically realistic [R5].

  • Graded culture suspended capsular bag model: In patients, changes to the lens region following cataract surgery are transient, peaking in the days or weeks following surgery and returning to a baseline over time. To better reflect this clinical scenario, in 2017 Wormstone collaborated with HOYA Surgical Optics to modify the maintenance conditions for suspended capsular bag cultures [Grants A & C]. To achieve this, the team used human serum to drive growth and transforming growth factor β to promote fibrotic responses. Both were added in a graded manner, such that cultures were exposed to maximum levels over the first three days of culture and these levels were then reduced gradually over time. As predicted, features of posterior capsule opacification such as cell growth, light scatter and fibrotic responses could be mimicked in what is termed graded culture [R6]. Using this version of the model over a one-month culture period, the HOYA Vivinex™ intraocular lens was found to have an overall better level of anti-posterior capsule opacification performance than the market-leading intraocular lens. This predicted outcome of the model was borne out in a recent clinical study based on data obtained after an interval of three years following surgery [S5], which reported significantly lower posterior capsule opacification scores and a smaller percentage of cases needing laser treatment with HOYA Vivinex™ than with the market leader (11.4 and 18.6% of cases, respectively). The graded culture model therefore has clinical relevance and allows the anti-posterior capsule opacification performance of intraocular lenses (whether commercially available ones or prototypes) to be evaluated much more rapidly than previously.

Image: Modified dark-field images of match-paired capsular bags implanted with a HOYA Vivinex™ or an Alcon Acrysof™ intraocular lens. Credit: Michael Wormstone, published in [R6].

3. References to the research

Underpinning research: The underpinning research outputs have all been published in competitive, international, peer-reviewed journals and form part of a larger body of such published work (citation numbers are from Google Scholar; UEA author names are in bold):

  1. Wormstone IM, Del Rio-Tsonis K, McMahon G, Tamiya S, Davies PD, Marcantonio JM, Duncan G ( 2001) FGF: An autocrine regulator of human lens cell growth independent of added stimuli. *Investigative Ophthalmology & Visual **Sciences 42: 1305-1311. https://iovs.arvojournals.org/article.aspx?articleid=2162674. [85 citations]

  2. Eldred JA, McDonald M, Wilkes HS, Spalton DJ, Wormstone IM. ( 2016) Growth factor restriction impedes progression of wound healing following cataract surgery: identification of VEGF as a putative therapeutic target. Scientific Reports 6: 24453. DOI: 10.1038/srep24453 [14 citations]

  3. Wormstone IM, Tamiya ST, Anderson I, Duncan G ( 2002) TGF β2 induced matrix modification and cell transdifferentiation in the human lens capsular bag, *Investigative Ophthalmology & Visual Sciences 43: 2301-2308. https://iovs.arvojournals.org/article.aspx?articleid=2123745. [279 citations]

  4. Dawes LJ, Illingworth CD, Wormstone IM ( 2012) A fully human in vitro capsular bag model to permit intraocular lens. *Investigative Ophthalmology & Visual **Sciences 53: 23-29. DOI: 10.1167/iovs.11-8851 [23 citations]

  5. Eldred JA, Spalton DJ, Wormstone IM ( 2014) An in vitro evaluation of the Anew Zephyr® open bag IOL in the prevention of Posterior Capsule Opacification using a human capsular bag model, *Investigative Ophthalmology & Visual Sciences 55: 7057-7064. DOI:10.1167/iovs.14-15302 [27 citations]

  6. Eldred JA, Zheng J, Chen S, Wormstone IM ( 2019) An in vitro human lens capsular bag model adopting a graded culture regime to assess putative impact of IOLs on PCO formation. *Investigative Ophthalmology & Visual Sciences 60: 113–122. DOI: 10.1167/iovs.18-25930 [9 citations]

Funding: Funding of this research has come from international companies and, as competitive, peer-reviewed funding, from UK charities. Continuous funding from The Humane Research Trust since 2000 has supported work on human tissue, the most relevant being Grant A. Other key grants were provided by Fight for Sight [Grant B] and HOYA Surgical Optics [Grant C]:

Grant A: PI: IM Wormstone. Title: The Humane Research Trust Laboratory – infrastructure support. Funder: The Humane Research Trust. Project dates: 17 January 2007 – 31 December 2022. Total value: GBP1,888,001. Grant B: PI: IM Wormstone. Title: To identify the biological basis of open bag strategies for the prevention of posterior capsule opacification. Funder: Fight for Sight. Project dates: 1 October 2012 – 30 September 2015. Total value: GBP163,942. Grant C: PI: IM Wormstone. Title: Evaluation of a commercial HOYA intraocular lens and surface modified intraocular lenses using the human capsular bag model. Funder: HOYA Surgical Optics. Project dates: 15 November 2017 – 15 March 2019. Total value GBP140,000.

4. Details of the impact

The research of Wormstone and team in developing and enhancing the capsular bag model has achieved significant impacts on commerce, production and practitioners in the health sector, so improving the health and wellbeing of people. Specifically, it has: (a) enabled the rapid testing of novel clinical concepts, leading to the development and marketing of ocular products for a number of companies, so generating significant revenue; (b) positively impacted practitioners (surgeons); and (c) led to better outcomes and improved vision in many patients worldwide, immensely benefiting their quality of life.

(a) Impact on development and marketing of ocular products: The capsular bag model has played a key role in the development and evaluation of several intraocular lenses (IOL) including: the "bag-in-the-lens" intraocular lens (Morcher Type 89™); AnewOptics Zephyr™; Hoya Vivinex™; and Hoya Nanex™ [R5, R6; S1-S5]. These form part of a global intraocular lens market whose size was estimated to reach USD4,200,000,000 (12-2017) in 2020. To take the leading examples:

Bag-in-the-lens intraocular lens: Wormstone's research facilitated the development of this highly successful intraocular lens, which, since 2014, has been implanted in patients in more than 10,000 cataract operations in Europe [S1]. The Emeritus Head and Chair of the Department of Ophthalmology, Antwerp University Hospital, Belgium, who is the inventor of this lens and regularly implants it into patients in cataract surgery, stated, “The capsular bag model was an invaluable tool in translating my original concept to a clinical product” [S1]. The clinical outcomes from the large number of implantations of this lens are impressive. Specifically, in a five-year follow-up study, under 10% of children required additional surgical treatment after receiving the bag-in-the-lens intraocular lens [S2], whereas, with conventional surgery and standard intraocular lens implantation, 100% of children would have required it.

HOYA Vivinex™ and HOYA Nanex™ intraocular lenses: Since 2017, following an approach by the company on the basis of his research record and expertise, Wormstone has served as a consultant for HOYA Surgical Optics, one of the largest intraocular lens manufacturers globally, to aid their product development programme [S3]. Wormstone’s graded culture suspended capsular bag model [R6] found that the HOYA Vivinex™ intraocular lens had an overall better level of anti-posterior capsule opacification performance than the market-leading intraocular lens. The data from these studies, obtained within months [R6], predicted clinical outcomes that took years to obtain [S4]. As the HOYA Surgical Optics Global Product and Marketing Directors stated, “The capsular bag model is, therefore, a very powerful clinically relevant tool that can be used to evaluate and develop IOL performance” [S3]. They also stated, “The quality of the work and the significance of the published findings provided by Prof. Wormstone, using the capsular bag model, have greatly aided our ability to market our products” [S3].

In 2018 Wormstone presented his work on the capsular bag model as a keynote speaker at the HOYA symposium in Vienna, Austria, to an audience of approximately 300 ophthalmic surgeons, assembled as potential end-users of HOYA products. This presentation, along with follow-up content, was then used by the company for its marketing. As the HOYA Surgical Optics Global Product and Marketing Directors stated, “ The presentation in Vienna was recorded and is available in the HOYA collection on the Eyetube web platform. Prof. Wormstone’s work was also a key element in an advertorial published in ‘The Ophthalmologist’ which was followed by a feature article highlighting the capsular bag model and its demonstration of the performance of Vivinex™. A further feature article was published in ‘Eurotimes’ [magazine of the European Society of Cataract and Refractive Surgeons] . Collectively these publications have a readership of over 50,000 internationally, the majority of which are ophthalmic surgeons” [S3, S5]. In his capacity as consultant, Wormstone also used the capsular bag model in the preclinical development and assessment of the HOYA Nanex™ IOL (designed for microincision cataract surgery), which was added to the HOYA clinical product portfolio in 2019 [S3].

Referring to the UEA capsular bag studies, HOYA Global Product and Marketing Directors stated, “These activities have contributed to the continued growth and success of HOYA Surgical Optics and our products. HOYA Surgical Optics is now the world’s third largest IOL manufacturer globally, and has been the fastest growing of the largest IOL manufacturers in recent years. Professor Wormstone and his work on the capsular bag model continue to impact on the success of our company...” [S3].

(b) Impact on practitioners: Wormstone has delivered several invited talks at practitioner-based events, including: 100% Optical (2017) [S6]; the Cambridge Ophthalmological Symposium (2019) [S7-S8]; and two HOYA symposia (2017 and 2018), allowing him to present his research directly to ophthalmic surgeons [S3]. Wormstone's presentations, in addition to his publications in peer-reviewed journals and practitioner-based magazines, have achieved impact through informing clinicians of relative intraocular lens performance [S3, S6-S8]. For example, the Associate Professor of Ophthalmology, Ludwig-Maximillians-University of Munich, Germany, a distinguished and experienced cataract surgeon, approached Wormstone following a keynote lecture. Wormstone then visited her in Munich to pass on his knowledge of the capsular bag model and provide practical feedback. This technique has been fundamental in this practitioner's research strategy and clinical practice from 2014 onwards and, as she has stated, “The capsular bag model developed by Prof Wormstone has had a marked impact on cataract surgery....The data provided using the capsular bag model, therefore, provides scientifically rigorous findings that can inform the surgeon and aid their selection of IOL for their patients” [S9].

(c) Impact on patients: The ultimate beneficiaries of advances made using the capsular bag model as an experimental and evaluation tool are patients. As detailed above, the bag-in-the-lens intraocular lens has led to much improved clinical outcomes for children [S1, S2]. To quote further the Emeritus Head and Chair of the Department of Ophthalmology, University Hospital, Antwerp, Belgium, it “...has provided and maintained vision in tens of thousands of cataract patients” [S1]. In addition, of the best-selling intraocular lenses, HOYA Vivinex™ continues to increase its market share and offers improved clinical outcomes relative to the current market leader, such that posterior capsule opacification is better managed and the need for laser surgery is reduced [R6, S4]. Ultimately, benefits to patients across the world result from decisions made by surgeons and the impact the capsular bag model has on this process is highlighted in the following statement by the Associate Professor of Ophthalmology, Ludwig-Maximillians-University of Munich, Germany: “I have drawn on my knowledge from capsular bag studies to guide colleagues on their IOL choices, which I believe have positively impacted on many patients since 2014” [S9].

5. Sources to corroborate the impact

  1. Letter from the Emeritus Head and Chair of the Department of Ophthalmology of Antwerp University Hospital (UZA), Antwerp, Belgium (7.9.20).

  2. Van Looveren J, Ni Dhubhghaill S, Godts D, Bakker E, De Veuster I, Mathysen DG, Tassignon MJ (2015) Pediatric bag-in-the-lens intraocular lens implantation: long-term follow-up. Journal of Cataract & Refractive Surgery 41: 1685-1692. DOI: 10.1016/j.jcrs.2014.12.057 [Publication reporting significant mitigation of posterior capsule opacification in children implanted with the bag-in-the-lens intraocular lens.]

  3. Letter from Global Product Director, and Global Marketing Director, of HOYA Surgical Optics (25.9.20).

  4. Leydolt C, Schartmuller D, Schwarzenbacher L, Roggla V, Schriefl S, Menapace R (2020) Posterior capsule opacification with two hydrophobic acrylic intraocular lenses: 3-year results of a randomized trial. American Journal of Ophthalmology 217: 224–231. DOI: 10.1016/j.ajo.2020.04.011. [Publication reporting clinical data that show better posterior capsule opacification management with HOYA Vivinex™ versus the market-leading intraocular lens; cites R6 on p. 229.]

  5. HOYA advertorial supplement -The Best of Multiple Worlds? The Ophthalmologist (2018)

  6. E-mail from Head of Education and OT Clinical Editor detailing Wormstone’s involvement in 100% Optical event and feedback/evaluation (5.10.17).

  7. Letter from Consultant Opthalmic and Vitreoretinal Surgeon and organiser of the 49th Cambridge Ophthalmological Symposium (18.9.20). [Feedback following invited talk by Wormstone in 2019.]

  8. Wormstone IM (2020) The human capsular bag model of posterior capsule opacification. Eye 34: 225–231. DOI: 10.1038/s41433-019-0680 [Publication associated with the 2019 Cambridge Ophthalmological Symposium.]

  9. Letter from Associate Professor of Ophthalmology, Ludwig-Maximillians-University of Munich, Germany (23.9.20).

Submitting institution
The University of East Anglia
Unit of assessment
5 - Biological Sciences
Summary impact type
Technological
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

Potato is the third most directly consumed crop worldwide and is important for food security in many low- and middle-income countries. Potato late blight is the most destructive disease of potato. It caused the Irish potato famine of the 1840s and still leads to multibillion dollar annual losses globally. To control it, Jones discovered and cloned the first disease Resistance ( R) gene to be deployed in a genetically modified (GM) crop. Jones also developed a novel method ("RenSeq") to accelerate Resistance gene discovery, and cloned additional blight resistance genes from wild potato relatives. This research has led to impacts on commerce, the economy, production and public policy. Specifically, Jones's initial Resistance gene ( Rpi-vnt1) has been deployed for late blight control in GM commercial potatoes by US company Simplot, and RenSeq kits are now being commercially marketed by another US company, Arbor Biosciences. Jones’s initial Resistance gene and later-discovered ones have also been patented and licensed. In addition, RenSeq has been widely adopted in the public and private sectors for Resistance gene cloning in a range of crops and Jones's advice and advocacy have influenced GM policy debates within the UK Parliament and Government.

2. Underpinning research

Embedded image Potatoes play a key role in food security, in the UK and worldwide. However, potato yield and quality are constrained by susceptibility to diseases and pests, particularly late blight caused by the potato blight microorganism Phytophthora infestans, and by fungi, viruses, bacteria and nematodes. According to the Agriculture and Horticulture Development Board, to control late blight, UK potatoes require up to 15-20 sprays of agrichemicals per year, costing UK potato farmers approximately GBP50,000,000 per year. As fungicide-resistant late blight strains have evolved, better blight control is essential.

Resistance ( R) genes enable plants to detect molecules from pests and pathogens and activate defence mechanisms. But using plant molecular genetics and breeding to exploit Resistance genes in crops faces three major challenges. First, if effective Resistance genes are absent from the crop gene pool, they must be found in wild relatives. Second, isolating Resistance genes from complex genomes such as those of wheat and potato is difficult. Third, Resistance genes need to be deployed in crop varieties in a manner that maximises durability. Here, breeders face a problem analogous to that posed by anti-microbial resistance to antibiotics, in that pathogens can rapidly evolve new means of avoiding countermeasures deployed against them. Jones's research [e.g. Grants A-D] has addressed all three of these challenges:

Gene discovery in wild crop relatives: Limited genetic variation for late blight resistance is available to potato breeders in modern potatoes, which is why blight continues to be a problem. To address this challenge, Jones and team pioneered the use of a wild relative of potato, American black nightshade ( Solanum americanum), as a novel source of blight resistance genes [R1].

Identifying genes for resistance in complex genomes: Most Resistance ( R) genes encode "NLR" (nucleotide binding, leucine-rich repeat) immune receptor proteins. Crop genomes such as those of potato and wheat are large and complex and carry many hundreds of NLR-encoding genes. However, identifying which NLR gene among the large numbers present confers a specific and valuable resistance against an important pathogen is challenging. Since 2013, Jones and team have invented and refined a novel method termed Resistance gene enrichment sequencing ("RenSeq") for this purpose [R2]. RenSeq uses sequence capture of NLR-encoding genes [R2] and then integrates this with long-read genome sequencing such as PacBio circular consensus sequencing [R1]. This advance has created an unprecedented ability to define and distinguish multiple closely-related NLR-encoding genes in potato and wheat, and paved the way for rapid Resistance gene discovery in diploid and polyploid plants [R1-R3]. Prior to Jones's work, Resistance gene cloning was extremely laborious, involving screening of large insert libraries and "chromosome walking". RenSeq removes the need for this, enabling researchers to "land" on NLR-encoding genes that can then be tested for function. This work has also underpinned novel methods to characterise Resistance gene diversity in plants [R3]. Jones's major contributions to the understanding of plant disease resistance were recognised by his election in 2015 as an International Member of the US National Academy of Sciences.

Using RenSeq, Jones and team have identified several novel Resistance to Phytophthora infestans ( Rpi) genes, including Rpi-amr3 [R1] and the recently-discovered Rpi-amr1 [S1, S2]. The first Rpi gene cloned by the Jones team (before the development of RenSeq) was Rpi-vnt1 in 2009 [R4]. In collaboration with Simplot, a US food and agribusiness company, all three of these Rpi genes have been transferred into elite US potato cultivars. Commercial release of modified potatoes then began in 2018 in the US. Jones and colleagues also used RenSeq to clone Rysto, which is a Resistance gene against potato virus Y (PVY), a major problem for potato growers worldwide [R5]. This gene is being added to the set of Rpi genes in the UK's most popular potato variety, Maris Piper.

Gene stacking to slow the evolution of pathogen resistance: Wise and sustainable deployment of Resistance genes requires care, because use of single Resistance genes applies a strong selective pressure on pathogens, which can evolve to overcome single genes within 3-5 years. To meet this challenge, and to increase the sustainability of modified crops, Jones has pioneered the refinement of methods for Resistance gene "stacking", in which sets of several Resistance genes are added to the genomes of modified crops, requiring pathogens to undergo several mutations to cause disease, thus slowing the evolution of resistance [R6]. The utility of the resulting plants has been verified in multiple GM field trials in the UK. Specifically, trials in 2020 at the National Institute of Agricultural Botany (NIAB) in Cambridge identified lines ("PiperPlus") that are indistinguishable from Maris Piper potatoes, except for full blight resistance (including tuber blight resistance). These lines also showed improved tuber quality (reduced bruising and lowered reducing sugars after cold storage).

Image: Field trial of Maris Piper (left, dead) and GM Maris Piper (right, green, containing Rpi gene stack) potato, Norwich, UK, 2018. Credit: Jonathan Jones, The Sainsbury Laboratory.

3. References to the research

Underpinning research: The six outputs underpinning the research are all published in competitive, international peer-reviewed journals and have collectively been cited over 740 times (citation numbers are from Google Scholar; UEA author names are in bold):

  1. Witek K, Jupe F, Witek AI, Baker D, Clark MD, Jones JDG ( 2016) Accelerated cloning of a potato blight-resistance gene using RenSeq and SMRT sequencing. Nature Biotechnology 34: 656-660. DOI: 10.1038/nbt.3540 [135 citations]

  2. Jupe F, Witek K, Verweij W, Sliwka J, Pritchard L, Etherington GJ, Maclean D, Cock PJ, Leggett RM, Bryan GJ, Cardle L, Hein I, Jones JDG ( 2013) Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations. The Plant Journal 76: 530-544. DOI: 10.1111/tpj.12307. [246 citations]

  3. Van de Weyer A-L, Monteiro F, Furzer OJ, Nishimura MT, Cevik V, Witek K, Jones JDG, Dangl JL, Weigel D, Bemm F ( 2019) A species-wide inventory of NLR Genes and alleles in Arabidopsis thaliana. Cell 178: 1260-1272. DOI: 10.1016/j.cell.2019.07.038 [57 citations]

  4. Foster SJ, Park T-H, Pel M, Brigneti G, Sliwka J, Jagger L, Vossen E, Jones JDG ( 2009) Rpi-vnt1, a Tm-2(2) homolog from Solanum venturii, confers resistance to potato late blight. Molecular Plant-Microbe Interactions 22: 589-600. DOI: 10.1094/MPMI-22-5-0589 [178 citations]

  5. Grech-Baran M, Witek K, Szajko K, Witek AI, Morgiewicz K, Wasilewicz-Flis I, Jakuczun H, Marczewski W, Jones JDG, Hennig J ( 2020) Extreme resistance to Potato virus Y in potato carrying the Rysto gene is mediated by a TIR-NLR immune receptor. Plant Biotechnology Journal 8: 655-667. DOI: 10.1111/pbi.13230 [14 citations]

  6. Jones JDG, Witek K, Verweij W, Jupe F, Cooke D, Dorling S, Tomlinson L, Smoker M, Perkins S, Foster S ( 2014) Elevating crop disease resistance with cloned genes. Philosophical Transactions of the Royal Society B 17: 369: 20130087. DOI: 10.1098/rstb.2013.0087. [115 citations]

Funding: Funding of this research since 2001 has come from nine awards of competitive, peer-reviewed funding from BBSRC, the most relevant ones being: Grant A: PI: JDG Jones. Title: Isolation of new potato genes for resistance to Phytophthora infestans from wild diploid Solanum species. Funder: BBSRC. Project dates: 5/9/2005 – 4/12/2008. Total value: GBP353,382. Grant B: PI: JDG Jones. Title: New UK potato varieties with late blight and potato cyst nematode resistance, reduced bruising and improved processing quality. Funder: BBSRC Horticulture and Potato Initiative (HAPI). Project dates: 1/10/2015 – 30/9/2020. Total value: GBP474,002. Grant C: PI: JDG Jones. Title: Defining and deploying Rpi gene diversity in S. americanum to control late blight in potato. Funder: BBSRC Industrial Partnership Award with Simplot. Project dates: 1/10/2017 – 30/09/2021. Total value: GBP777,912. Grant D: PI: JDG Jones. Title: New potato varieties with late blight resistance, reduced bruising and improved processing quality. Funder: BBSRC Super Follow-on Fund. Project dates: 3/6/2019 – 2/6/2021. Total value: GBP330,310.

4. Details of the impact

The research of Jones and team on Resistance gene discovery and exploitation has led to impacts on commerce, the economy, production and public policy, benefiting companies, agricultural practitioners, the public and government nationally and internationally:

Impact on commerce, the economy and production via crop improvement: **Jones'**s research enabled isolation of the late blight Resistance genes Rpi-vnt1, Rpi-amr1 and Rpi-amr3 [R1, R2, R4; S1], and showed that Rpi-vnt1 functions well in the field in the UK. Patents for all three of these genes have been filed [S1] and licensed by Simplot [S2]. A patent for the potato virus Y Resistance gene ( Rysto) has also been filed [R5, S1]. Jones's close relationship with Simplot, which arose following an approach by the company, has included two BBSRC Industrial Partnership Awards in which the company has been a 10% contributing partner [e.g. Grant C]. Jones collaborated with Simplot and UK biotechnology company BioPotatoes Ltd to bring the three late blight Rpi genes to field trials in Maris Piper potatoes. This project is in its fourth year (currently supported by BBSRC Super Follow-on Funding, Grant D), with trials on ten advanced lines having taken place in 2020 at the National Institute of Agricultural Botany, enabling selection of the elite "PiperPlus" line. Jones is now advancing this line towards regulatory approval and commercialisation. As the Plant Biology and Molecular Biology R&D Directors at Simplot Plant Sciences stated, "Prof. Jonathan Jones, in partnership with BioPotatoes Ltd, has enhanced the UK potato variety Maris Piper with robust late blight resistance and improved processing qualities. The combination of resources resulted in a Maris Piper potato that has a lower cost of production, higher marketable yield and significant benefits for British producers, processors and consumers. Late blight resistance was accomplished via expression of resistance genes Rpi-vnt1, Rpi-amr3 and Rpi-amr1 cloned and characterized in the Jones lab." [S2].

In addition, Simplot is already selling a genetically modified (GM) blight-resistant potato, Innate® 2.0, carrying Jones's Rpi-vnt1 in the USA [S2], with this variety having been approved by the United States' Department of Agriculture (USDA), Environmental Protection Agency (EPA) and Food and Drug Administration (FDA) for commercial growing and human consumption [S3]. This represents a breakthrough for the deployment of GM methods as it is the first ever commercial deployment of a cloned Resistance gene in a major crop. Simplot will also use Rpi-amr3 in their next generation of Innate® 3.0 potato lines. Simplot project that use of Innate® potatoes will save growers tens of millions of dollars in money otherwise spent on fungicidal prevention of late blight, and result in a more sustainably grown potato [S2]. Potatoes with Resistance genes from Jones's work are also being field-trialled in Africa [S4], Bangladesh and Indonesia [S2], underlining their potential to increase food security in low- and middle-income countries [S2].

Evidencing Jones's overall contribution, Simplot Plant Sciences stated, "The discoveries of Dr. Jones have enabled Simplot … to achieve its commercial and philanthropic goals." Moreover, "[Jones] … played a pivotal role in this potato late blight protection breakthrough and Simplot looks forward to further collaborations in the future. Having accomplished what we consider a genetic solution to late blight for the United States and perhaps most of the world, we anticipate moving on in collaboration with Dr. Jones to solve other potato diseases including potato virus Y." [S2].

Impact on commerce, the economy and production via new technologies: Jones's work has enabled researchers to investigate immune receptor diversity and accelerate the cloning of useful Resistance genes in crops. In particular, Jones's methods are now widely used by publicly-funded laboratories working on other crop species, including wheat [e.g. S5]. In the private plant breeding sector, RenSeq has become standard practice for investigators working on disease resistance. Evidencing this, following Jones's publication of the RenSeq method [R2], the US molecular biology development and manufacturing company Arbor Biosciences has been marketing commercial RenSeq kits (since 2014) and services (as “myReads®” since 2016) [S6]. Arbor Biosciences reported that: "Our customer base for the RenSeq technology is made up of academics, industry [and] governmental organizations (in the USA, Europe and Oceania) … and has led to a general expansion of disease resistance gene cloning capabilities beyond cereals." [S6]. Furthermore, "Jones’ RenSeq technology has had a substantial beneficial impact on our company. Arbor’s annual NGS [Next Generation Sequencing] services income represents roughly 30% of our overall turnover, and RenSeq accounts for roughly 20% of this in the last fiscal year, and roughly 10% of our services income in total since RenSeq was first offered in 2016” [S6]. The total RENSeq “myReads®” services revenue from launch in 2016 to financial year end 2020 was [redacted text] and for financial year 2020 alone was [redacted text] [S6].

Jones's work underpinning the intellectual rationale for gene stacking [R6, S4] has been used to develop a wheat variety carrying a stack of five stem rust resistance genes. The 2Blades Foundation, a not-for-profit company partnered with The Sainsbury Laboratory, has collaborated with the International Maize and Wheat Improvement Center (CIMMYT) in Mexico to deploy this wheat rust resistance gene stack in CIMMYT wheat lines [S7].

Impact on public policy via outreach and advocacy: Jones is a long-standing advocate of using GM methods for crop improvement and, in this context, is highly active in public education and policy arenas. Jones regularly publicly advocates for GM methods in press interviews and articles [S8]. In addition, Jones has contributed to the evidence that policy changes on GM regulation would be in the public interest. For example, he was a co-author of a 2014 report cited in the Council for Science and Technology's letter advising the Prime Minister's office on the risks and benefits of GM technologies and has also presented the GM case to UK parliamentarians [S9].

Evidencing the reach of such advice, in his first speech as Prime Minister, Mr Johnson said, "let’s start now to liberate the UK’s extraordinary bioscience sector from anti-genetic modification rules, and let’s develop the blight-resistant crops that will feed the world" [S10]. More specifically, a member of the House of Lords with expertise in the field stated, *"*[Jones's advocacy] has an enormous impact on the debate within the UK, in Europe and globally. I have attended many meetings in which parliamentarians, civil servants, government ministers, government scientific advisors, media commentators and others have benefited from [his] … presentations and discussions, and these have had a real impact on decisions taken. … A good instance of his impact can be found in the current government consultation on changing the regulations to allow gene editing in agriculture, and to consider how to regulate genetic modification after that. This consultation was announced by the government in response to an amendment to the agriculture bill in the Lords. The amendment and many of the speeches in favour of it benefited directly from advice given by Prof Jones, and the shape of the consultation since has also benefited from his wisdom and advice." [S10]. The Agriculture Bill was passed into law in November 2020 [S10].

5. Sources to corroborate the impact

  1. Patent Filings: Patent for Rpi-vnt1 (aka Rpi-oka1) and Rpi-mcq1: US8367893;

Patent for Rpi-amr1: US20190359998; Patent for Rpi-amr3: EP3294892; Patent for Rysto: WO2019023587.

  1. Letter from the Director of Plant Biology R&D and the Director of Molecular Biology R&D, Simplot Plant Sciences (15.12.20).

  2. US agency approval of Simplot's Innate® 2.0 potato: (a) Article (from nbcnews.com) reporting USDA approval (31.10.16), accessed 14.1.21; (b) Spud Smart article (from spudsmart.com) reporting EPA and FDA approval (28.2.17), accessed 25.2.21.

  3. Ghislain M et al. (2019) Stacking three late blight resistance genes from wild species directly into African highland potato varieties confers complete field resistance to local blight races Plant Biotechnology Journal 17: 1119-1129. DOI: 10.1111/pbi.13042

  4. Arora S et al. (2019) Resistance gene cloning from a wild crop relative by sequence capture and association genetics. Nature Biotechnology 37:139-143 DOI: 10.1038/s41587-018-0007-9

  5. Arbor Biosciences: (a) Letter from R&D Manager, NGS Division, Arbor Biosciences (18.2.21); (b) company webpage (from arborbiosci.com) advertising RenSeq technology for sale, accessed 14.1.21, citing [R2] in first paragraph; (c) e-mail with RenSeq revenue (10.3.21).

  6. 2Blades's announcement (from 2blades.org) (7.12.16), accessed 1.3.21.

  7. Public GM advocacy: (a) BBC News article (from bbc.co.uk), citing [S9a] and Jones (14.3.14), accessed 14.1.21; (b) Food Research Collaboration website article (from foodresearch.org) by Jones (14.3.17), accessed 14.1.21.

  8. Report/advice to parliamentarians: (a) Baulcombe D … Jones J et al. (2014) GM Science Update: A report to the Council for Science and Technology; and Council for Science and Technology's letter advising the Prime Minister on the risks and benefits of GM technologies; both available at gov.co.uk, accessed 14.1.21; (b) UK All-party Parliamentary Group on Science and Technology in Agriculture, listing Jones as a guest speaker (19.5.20), accessed 1.3.21.

  9. Impact on government: (a) Boris Johnson's first speech (from gov.co.uk) as Prime Minister (24.7.19), accessed 14.1.21; (b) Letter from member of the House of Lords (15.1.21); (c) Announcement of Agriculture Bill becoming law (11.11.20), accessed 10.3.21.

Submitting institution
The University of East Anglia
Unit of assessment
5 - Biological Sciences
Summary impact type
Environmental
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

Yu has pioneered the use of environmental DNA samples to measure the compositions of ecological communities. In 2016, Yu co-founded NatureMetrics Ltd, the first commercial UK provider of DNA metabarcoding analyses to the global environmental impact assessment market. NatureMetrics enables clients to measure biodiversity with higher efficiency across the lifecycle of infrastructure projects, from pre-project baselines to post-project habitat restoration. NatureMetrics has grown very rapidly. By the end of the third full year of operation (2019), it had doubled gross profit. In 2019, a Series A investment funding round valued NatureMetrics at GBP7,500,000. Revenue in 2020 was GBP1,000,976, which exceeded 2019 revenue despite the COVID-19 pandemic. As of December 2020, the company had 33 employees, including 15 with PhDs. The company has also had substantial impacts via its clients. It has analysed over 8,000 environmental samples from more than 15 countries across the globe for over 90 clients, benefiting governments, corporations, NGOs and the environment.

2. Underpinning research

Embedded image Governments, lenders, consumers and the public mandate that society monitor and mitigate the impact of human activities on biodiversity, and private businesses are increasingly pledging “No Net Loss” or even “Net Gain” in biodiversity as a result of business operations. To achieve these goals, practitioners must be able to measure biodiversity accurately. However, measuring biodiversity and change in biodiversity ("biomonitoring") is a labour-intensive, error-prone and costly process. For instance, conventional surveys of fish biodiversity require multiple rounds of electrofishing and netting and still fail to detect most fish species present.

In 2012, Yu led one of the first experimental tests showing that "metabarcoding" of mass-trapped organisms (in this case, arthropods) could recover accurate estimates of species diversity and composition. Metabarcoding involves the use of the polymerase-chain reaction (PCR) to amplify gene fragments, followed by high-throughput DNA sequencing, allowing the many organisms present in a mass sample to be identified. This paper [R1] was included in the 2014 “Top Methods” issue of the journal Methods in Ecology and Evolution.

In 2013 and 2014, Yu conducted follow-up studies [R2, R3] that compared metabarcoded mass-trapped arthropod samples (insect "soups") against gold-standard, morphology-based biodiversity datasets comprising tens of thousands of arthropod specimens and bird observations identified to species level by expert taxonomists using thousands of person-hours of effort. These studies showed that the metabarcode datasets produced estimates of species diversities and compositions highly similar to those produced by morphological identification. Crucially, the studies also showed that the datasets produced similar management decisions for two conservation applications, namely restoration ecology and systematic conservation planning. Relative to the morphology datasets, the metabarcode datasets were documented to be many times quicker and cheaper to produce, while also being auditable by third parties and less reliant on scarce taxonomic expertise.

Yu's research [R1-R3] provided some of the earliest evidence that metabarcoding can be a reliable and efficient method for biomonitoring of animals, plants and fungi, with direct application to environmental impact assessment. These studies, plus research by Dr Catharine (Kat) Bruce in a PhD studentship supervised at UEA by Yu [Grant A] and published in [R2] and [R4], provided the justification, evidence and credibility that led to Yu, Bruce and Professor Alfried Vogler (Imperial College) winning a NERC Follow-on-Fund grant in 2015 [Grant B] to co-found NatureMetrics Ltd. Bruce was the CEO for the first four years, and Yu and Vogler are members of the scientific advisory board.

In a parallel development, in 2008 molecular ecologists started reporting that trace amounts of DNA in the environment can be detected via quantitative PCR and metabarcoding. Such "environmental DNA" (eDNA) comes, for example, from organismal secretions dissolved into water (e.g. mucus shed by fish or amphibians) or from organismal tissue released externally by other means (e.g. residual vertebrate bloodmeals in leeches). In particular, it was found that eDNA sampled from water bodies can be used to detect, identify and partially quantify the abundance of aquatic vertebrates, especially fish species. Yu co-authored a highly-cited review that showcased potential uses of eDNA [R5] and lead-authored a research study showing that accurate estimates of fish abundances are achievable using quantitative PCR of eDNA present in streamwater samples [R6]. The combination of metabarcoding and eDNA is revolutionising biomonitoring, especially in aquatic habitats, which were previously some of the most difficult habitats to survey and are now among the most straightforward.

Image: Great Crested Newts. Credit: Bouke ten Cate - Own work, CC BY-SA 4.0, https://commons.wikimedia.org/w/index.php?curid=75475057.

3. References to the research

Underpinning research: The six outputs underpinning the research have all been published in competitive, international peer-reviewed journals, with three of them having been cited more than 400 times each (citation numbers are from Google Scholar; UEA author names are in bold):

  1. Yu DW, Ji YQ., Emerson BC, Wang XY, Ye CX, Yang CY, Ding ZL ( 2012) Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring. Methods in Ecology & Evolution, 3: 613-623. DOI:10.1111/j.2041-210X.2012.00198.x [453 citations]

  2. Ji YQ, Ashton L, Pedley SM, Edwards DP, Tang Y, Nakamura A, Kitching RL, Dolman, P, Woodcock P, Edwards FA, Larsen TH, Hsu WW, Benedick S, Hamer KC, Wilcove DS, Bruce C, Wang XY, Levi T, Lott M, Emerson BC, Yu DW ( 2013) Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding, Ecology Letters, 16: 1245-1257. DOI:10.1111/ele.12162 [428 citations]

  3. Edwards, DP, Magrach A, Woodcock P, Ji, YQ, Lim NTL, Edwards FA, Larsen TH, Hsu W, Benedick S, Khen CV, Chung AYC, Reynolds G, Fisher G, Laurance W, Wilcove DS, Yu DW ( 2014) Selective-logging and oil palm: multitaxon impacts, biodiversity indicators, and trade-offs for conservation planning. Ecological Applications, 24: 2029-2049. DOI:10.1890/14-0010.1 [76 citations]

  4. Barsoum N, Bruce C, Forster J, Ji YQ, Yu DW ( 2019) The devil is in the detail: Metabarcoding of arthropods provides a sensitive measure of biodiversity response to forest stand composition compared withsurrogate measures of biodiversity. Ecological Indicators, 101: 313-323. DOI:10.1016/j.ecolind.2019.01.023 [13 citations]

  5. Bohmann K, Evans A, Gilbert MTP, Carvalho GR, Creer S, Knapp M, Yu DW, de Bruyn, M ( 2014) Environmental DNA for wildlife biology and biodiversity monitoring. Trends in Ecology & Evolution, 29: 358-367. DOI:10.1016/j.tree.2014.04.003 [614 citations]

  6. Levi T, Allen JM, Bell D, Joyce J, Russell JR, Tallmon DA, Vulstek SC, Yang CY, Yu DW ( 2019) Environmental DNA for the enumeration and management of Pacific salmon. Molecular Ecology Resources 19: 597-608. DOI:10.1111/1755-0998.12987 [24 citations]

Funding: Funding for the research came from a UKRI Research Council PhD studentship [Grant A] and from UKRI Research Council Follow-on Funding [Grant B]: Grant A: Primary supervisor: DW Yu. Title: From metacommunity dynamics to rapid biodiversity assessment: DNA-based approaches expand horizons in both fundamental and applied ecology. Funder: NERC PhD Studentship to Catharine Bruce. Project dates: 2010-2014. Value GBP59,951; Grant B : PI: DW Yu. Title: High-throughput, DNA-based biodiversity assessment and detection for the environmental consultancy market. Funder: NERC Follow-on-Fund. Project dates: 30 June 2015 – 29 June 2016. Total value: GBP197,612 between UEA and Imperial College (GBP81,085 to UEA).

4. Details of the impact

Embedded image Yu’s research has had a large number of impacts on a global scale, including the direct impacts of NatureMetrics Ltd on commerce and the economy, which have been followed by downstream impacts via the effects of NatureMetrics on clients, practitioners, production, public policy and the environment.

Direct impact on commerce and the economy: NatureMetrics began trading in 2016, starting with the use of aquatic eDNA to detect Great Crested Newts at building sites. Related to this, NatureMetrics developed a filter kit for aquatic eDNA and filed a patent, now at international application Patent Cooperation Treaty (PCT) stage (WO2020128503A1). The company has grown very rapidly. By 2019, its third full year of operation, it was processing 4,750 samples from 92 clients and over 15 countries, with approximately 60% of revenue coming from commercial organisations, 20% from government, 10% from NGOs and 10% from grant-funded projects [S1a]. In 2020, despite the COVID-19 pandemic, it processed 3,285 samples from 90 clients [S1b], with approximately 68% of revenue coming from commercial organisations, 6% from government, 8% from NGOs, 10% from grant-funded projects and 8% from universities and research institutes [S1a]. By the end of 2019, it had doubled gross profit [S1b]. In June 2019, NatureMetrics raised GBP2,500,000 [S1c] in a Series A investment round that was oversubscribed by 2.5 times, valuing the company at GBP7,500,000 [S1d]. NatureMetrics then implemented a growth plan, which has been slowed but not interrupted by the COVID-19 pandemic. Revenue in 2019 was GBP713,796, and revenue in 2020 was GBP1,000,976 [S1b]. The company's size in terms of numbers of people employed has also increased rapidly. As at December 2020, NatureMetrics had 33 employees (headcount 33, FTE 31.4), including 15 with PhDs (headcount 15, FTE 14.8) [S1e].

Impacts on clients, practitioners, production, public policy and the environment: NatureMetrics helps clients undertake work that would be far more costly, or outright impossible, without the company’s services. The eDNA sampling kits and analysis services offered by NatureMetrics make biomonitoring safer for clients and their employees to conduct in challenging natural environments. The following is a selection of leading examples of clients and spheres of activity that have benefited from NatureMetrics:

NatureSpace Partnership: NatureMetrics is a key service provider to and investor in the NatureSpace Partnership, a private company operating the UK’s largest biodiversity offset market. NatureMetrics’s eDNA service makes it possible for NatureSpace to rapidly survey hundreds of ponds to model the distribution of the Great Crested Newt, a species protected in the UK under the Wildlife and Countryside Act, 1981. Builders in surveyed areas can buy a licence to offset the effects of developments on Great Crested Newt populations, the fee rising with their modelled impact on the newt. This arrangement reduces costs and risk compared to newt relocation, while also funding the creation of four new ponds per affected pond. As of 2020, NatureSpace have raised GBP1,000,000 and created 100 new ponds, operating across 40 Local Planning Authorities in the UK. As NatureSpace Partnership’s Chief Executive has stated, “ Without NatureMetrics’ technical expertise and early investment, we would not have succeeded” [S2].

Environmental Resources Management: NatureMetrics gives the multinational environmental consultancy ERM “ a competitive edge over consultants using conventional survey techniques alone,” as stated by ERM’s Chief Ecologist [S3]. A large part of ERM’s work consists of surveys of aquatic habitats to establish baselines for future monitoring (e.g. to detect pollutant spills), to identify offset sites and to select amongst alternative project sites. In 2016-17, ERM piloted NatureMetrics’s kits in Sierra Leone. Relative to their standard methods, ERM sampled more safely, covered a larger area, detected four times as many fish species and halved survey costs [S3]. In 2020, ERM used NatureMetrics for surveys in Russia and Serbia and is now considering eDNA for further projects around the world. As ERM’s Technical Director stated, “ ERM believes that eDNA provides both business and conservation benefits, and NatureMetrics role in developing the new technology has included assisting ERM to become a more informed consumer and user of eDNA” [S3].

Environmental charities: In 2019, the Freshwater Habitats Trust (FHT) used NatureMetrics’s kits to survey 21 New Forest sites where they had data from conventional surveys. Using eDNA, volunteers were able to detect more species and “ [a]t low cost, collected data in a couple of days from a network of stream sites that would otherwise have taken a conventional 2-3 person survey team most of the summer to visit,” as stated by FHT’s Director [S4].

Internationally, in 2018, Worldwide Fund for Nature (WWF) Peru surveyed a 390 km stretch of the Marañon River in Amazonian Peru and “ fully achieve[d] their survey goal of detecting the spatial distributions of six culturally and commercially important aquatic species…, and we exceeded our goal by also detecting hundreds of additional vertebrate species, which we can now start to take into account in designing a sensitive index of basin-ecosystem health….NatureMetrics has made it possible for WWF Peru to generate baseline biodiversity data much more efficiently and comprehensively,” as stated by WWF Peru’s Associate Ecosystem Services Research Officer [S5].

In 2020, Fauna and Flora International (FFI) collected aquatic eDNA in the transboundary Wonegizi-Ziama Massif Protected Areas between Guinea and Liberia. A total of 112 vertebrate species were detected, including the endangered White-bellied Pangolin. As FFI's Senior Programme Manager for West and Central Africa stated, “ The key benefits to FFI are increased biodiversity data…reduced survey costs…and ease of sampling.…[W]e can increase the…coverage of our sampling at a reduced cost, and we can more fully involve local people in conservation monitoring” [S6].

The British Trust for Ornithology (BTO) is using NatureMetrics’s metabarcoding service for arthropods to measure the efficacy of restoration projects in Polesia (a wetland running from Poland to Russia). Reduced costs allowed doubling of sample size from 120 to 240 sites. As BTO’s Senior Research Ecologist stated, “ Without NatureMetrics, we at BTO would not have had the capacity to carry out this part of the project, whereas with NatureMetrics, we anticipate an increased probability of success in achieving the aims of the Polesia project” [S7].

Regulatory standards-setting and end-user education: In her role as NatureMetrics’s first CEO, from 2017-2020, Bruce co-led a working group of a European Union Cooperation in Science and Technology (EU COST) action, DNAqua.Net, that submitted to the European Committee for Standardization the first European Standard related to eDNA [S8]. Bruce will also be on the steering committee of the soon-to-be-launched UK Business and Biodiversity Forum, a government-supported initiative exploring ways businesses can act to reverse biodiversity declines. In 2019, Yu wrote a contracted “Think Piece” for the UK Government’s Environment Agency for England to design an R&D strategy for incorporating DNA-based methods in the agency’s reporting [S9]. Lastly, in 2020, NatureMetrics was competitively selected as one of five small companies to join the UK’s High Speed 2 rail (HS2) Innovation Accelerator programme, the purpose of which is to accelerate the uptake of new technologies in building the HS2 railway. NatureMetrics was chosen to ensure the quality of HS2’s green corridor, including newly-created woodland [S10].

5. Sources to corroborate the impact

  1. NatureMetrics financial and size data:

a. E-mail from Business Development Director, NatureMetrics (6.11.20).

b. NatureMetrics Shareholders' Report, Q4, 2020.

c. Article from UK Business Angels Association (UKBAA) on NatureMetrics (8.7.19).

d. Investors’ document (2019) with calculation of company valuation.

e. Letter from the Operations Director of NatureMetrics with December 2020 data on employee number (25.1.21).

  1. Letter from the Chief Executive of NatureSpace Partnership, Stamford (20.10.20).

  2. Letters from the Chief Ecologist (17.4.19), and the Technical Director (22.10.20), of Environmental Resources Management, Edinburgh.

  3. Letter from the Director of Freshwater Habitats Trust (15.4.19).

  4. Letter from the Associate Ecosystem Services Research Officer, WWF Peru (17.4.19).

  5. Letter from the Senior Programme Manager for West and Central Africa, Fauna and Flora International (2.11.20).

  6. Letter from the Senior Research Ecologist, British Trust for Ornithology (28.10.20).

  7. Working draft of European Committee for Standardization (CEN) Standard: Water sampling for capture of macrobial environmental DNA in aquatic environments. New Work Item Proposal N 1229 in Technical Committee (TC) 230 (working group 28), pp. 3-10; and the UK Government announcement of the proposed standard from standardsdevelopment.bsigroup.com (accessed 14.1.21), p. 11; and the DNAqua.Net list of working group leaders, including Kat Bruce as co-leader of Working Group 3, Field & Lab Protocols from dnaqua.net (accessed 14.1.21), p. 13.

  8. Yu’s consultancy contract for the “Think Piece” (pp. 1-2), and Yu DW, Matechou E (2020) The contribution of DNA-based methods to achieving socio-ecological resilience: "Think Piece" commissioned by the UK Environment Agency (pp. 3-45).

  9. Webpage announcing selection of NatureMetrics for HS2 Innovation Accelerator programme, mediacentre.hs2.org.uk (accessed 4.11.20). [NatureMetrics is listed fourth in the alphabetical list.]

Submitting institution
The University of East Anglia
Unit of assessment
5 - Biological Sciences
Summary impact type
Environmental
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

Insect pollinators, especially bees, benefit food security and biodiversity worldwide, with an annual economic value measured in hundreds of billions of dollars. Yet many bee species, including 9% of Europe's bees, are threatened or declining. UEA research has led to impact to prevent or reverse such declines through two approaches. Bourke's research provided a key part of the evidence base for the UK Government's Countryside Stewardship agri-environment scheme for pollinators in England. Dicks's research contributed to a set of global policy recommendations on pollinators for governments, which were then incorporated into a formal decision of the United Nations' Convention on Biological Diversity, in turn stimulating the European Union's Pollinators Initiative and national pollinator strategies in up to 30 countries across the world.

2. Underpinning research

Embedded image Animal pollination, to which bees are major contributors, is worth USD235-577,000,000,000 (12-2016) to annual global crop production and its loss would reduce production by 5-8%. Pollinating bees comprise wild bees and managed populations of honeybees. Both contribute essential natural pollination services, and both are experiencing declines from a broad set of causes. These declines are most severe in wild bees, with 9% of European species assessed as Threatened. Hence research on how best to prevent or reverse wild bee declines is widely recognised as urgently needed. Bourke and Dicks have conducted empirical, field-based studies and large-scale data syntheses that have provided the evidence for government interventions and stimulated global policy development to aid wild bees and other pollinators.

Providing evidence for UK Government interventions to aid pollinators: A frequently-used government intervention to aid pollinators within agricultural landscapes is to pay land managers to plant strips of flowers along arable field margins to provide floral resources for pollinators. However, little evidence existed to demonstrate the effectiveness of such agri-environment schemes or to guide the scale over which they should be implemented. Bourke was Joint PI on a major collaborative project under the UK's Insect Pollinators Initiative [Grant A] designed to address these questions. This large-scale project investigated the spatial ecology of bumblebees ( Bombus species; see image), which form the main group of wild bee pollinators in temperate countries. The team used a novel combination of field ecology, remote sensing, DNA analysis and landscape modelling to determine the relationship between bees' use of space and the siting of floral resources in five representative bumblebee species [R1-R3]. The study area was in arable farmland experimentally planted with floral margins for pollinators based on the UK Government's existing agri-environment scheme for England [R1].

By measuring workers' colony-specific foraging distances (average distance flown by workers from a given nest to flower patches), the research showed that workers forage more closely to their nests in areas with greater coverage of semi-natural vegetation, including planted floral margins [R2, R3]. This suggested that planting these margins helps bee populations by reducing the energy workers spend on foraging longer distances [R2]. In the first analysis of its kind, the research also showed that bumblebee nests within 250-1,000m of high-quality floral resources are significantly more likely to have daughter queens surviving to the following spring [R3]. Overall, the findings both confirmed the value of agri-environment schemes for pollinators and indicated the spatial and temporal scale of the floral resources required for such interventions to be effective [R1-R3]. In particular, the team's research allowed it to estimate the proportion of agricultural landscape (1-3%) that would need to contain flower-rich habitat for the foraging distances of bumblebee workers to be maintained at or below their species averages [R2].

Stimulating global policy development to aid pollinators: Dicks was a Co-ordinating Lead Author of the UN's Inter-governmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) thematic assessment on pollinators, pollination and food production [S4]. By synthesising results and data from hundreds of scientific studies, this international collaboration produced the largest ever global assessment of pollinators. Dicks led the team producing the chapter on policy responses [S4], key findings of which were published in [R4]. Based on the information thereby acquired on the benefits provided by pollinators, the scale of their global declines and the threats they face, Dicks then led the development of 10 specific global policy recommendations for pollinators. These were developed through consultation with the scientific advice body (Subsidiary Body on Scientific, Technical and Technological Advice, SBSTTA) to the Convention on Biological Diversity, which is the UN's international treaty on biodiversity arising from the 1992 Rio Earth Summit. The 10 policy recommendations were published by Dicks and co-authors in [R5] and were to: "1. Raise pesticide regulatory standards. 2. Promote integrated pest management (IPM). 3. Include indirect and sublethal effects in GM crop risk assessments. 4. Regulate movement of managed pollinators. 5. Develop incentives, such as insurance schemes, to help farmers benefit from ecosystem services instead of agrochemicals. 6. Recognize pollination as an agricultural input in extension services. 7. Support diversified farming systems. 8. Conserve and restore 'green infrastructure' (a network of habitats that pollinators can move between) in agricultural and urban landscapes. 9. Develop long-term monitoring of pollinators and pollination. 10. Fund participatory research on improving yields in organic, diversified, and ecologically intensified farming" [R5].

Dicks and collaborators also published a research report for the Convention on Biological Diversity that synthesised evidence for the value of pollinators beyond their agricultural value (e.g. ecological, cultural, financial, health, human and social value) [R6]. Dicks contributed an entire section (Section 5.4, amounting to c. 10%) of this extensive report. Dicks conducted her work on global policy development for pollinators both before and after joining UEA in 2016 [Grant B], having previously been at the University of Cambridge from 2008, with the underpinning outputs [R4-R6] having been published when at UEA.

Image: Garden Bumblebee ( B. hortorum) worker with pollen load; Credit: Andrew Bourke

3. References to the research

Underpinning research: Six key outputs report the underpinning research - five papers in competitive, international, peer-reviewed journals and one report for an external body [R6] (citations numbers are from Google Scholar; UEA author names are in bold):

  1. Dreier S, Redhead JW, Warren IA, Bourke AFG, Heard MS, Jordan WC, Sumner S, Wang J, Carvell C ( 2014) Fine-scale spatial genetic structure of common and declining bumble bees across an agricultural landscape. Molecular Ecology 23: 3384-3395. DOI: 10.1111/mec.12823 [36 citations]

  2. Redhead JW, Dreier S, Bourke AFG, Heard MS, Jordan WC, Sumner S, Wang J, Carvell C ( 2016) Effects of habitat composition and landscape structure on worker foraging distances of five bumblebee species. Ecological Applications 26: 726-739. DOI: 10.1890/15-0546 [68 citations]

  3. Carvell C, Bourke AFG, Dreier S, Freeman SN, Hulmes S, Jordan WC, Redhead JW, Sumner S, Wang J, Heard MS ( 2017) Bumblebee family lineage survival is enhanced in high quality landscapes. Nature 543: 547-549. DOI:10.1038/nature21709 [115 citations]

  4. Potts SG, Imperatriz-Fonseca V, Ngo HT, Aizen MA, Biesmeijer JC, Breeze TD, Dicks LV, Garibaldi LA, Hill R, Settele J, Vanbergen AJ ( 2016) Safeguarding pollinators and their values to human well-being. Nature 540: 220-229. DOI:10.1038/nature20588 [573 citations]

  5. Dicks LV, Viana B, Bommarco R, Brosi B, Arizmendi MDC, Cunningham SA, Galetto L, Hill R, Lopes AV, Pires C, Taki H, Potts SG ( 2016) Ten policies for pollinators. Science 354: 975-976. DOI: 10.1126/science.aai9226 [122 citations]

  6. Aizen MA, … Dicks L, and 16 other authors ( 2018) Review of pollinators and pollination relevant to the conservation and sustainable use of biodiversity in all ecosystems, beyond their role in agriculture and food production. CBD/COP/14/INF/8. 10 November 2018. Published at: https://www.cbd.int/conferences/2018/cop-14/documents

Funding: Funding of the research has come from competitive, peer-reviewed sources, i.e. the Insect Pollinators Initiative (IPI), a UK initiative funding nine competitively selected projects [Grant A] and a NERC Independent Research Fellowship [Grant B]: Grant A: PIs (joint): C Carvell, UK Centre for Ecology & Hydrology, Wallingford (lead); A Bourke; the late W Jordan (Institute of Zoology, Zoological Society of London); Co-Is: M Heard (CEH, Wallingford; now National Trust); S Sumner (IoZ, ZSL; now UCL); J Wang (IoZ, ZSL). Title: Investigating the impact of habitat structure on queen and worker bumblebees in the field. Funder: Insect Pollinators Initiative (funded by BBSRC, NERC, Defra, Scottish Government and Welcome Trust). Project dates: 1 November 2010 – 31 October 2013. Total value: GBP666,105 (UEA GBP13,138). Grant B: PI: L Dicks. Title: Towards 'crop-pollinating' landscapes: quantifying pollen supply and demand to manage wild pollinators for their benefits to food production. Funder: NERC Independent Research Fellowship. Project dates: 28 September 2016 – 27 September 2021. Grant value: GBP555,266.

4. Details of the impact

Providing evidence for UK Government interventions to aid pollinators: Bourke's research has had impact through informing public policy with research evidence. This had led to changes in government regulations to enhance pollination services and biodiversity, so aiding pollinators and thereby benefiting agricultural practitioners and the environment.

In 2015 the UK Government launched a new version of Countryside Stewardship, its agri-environment scheme for England, to run to 2020 [S1]. Countryside Stewardship provides financial incentives to farmers, foresters and land managers to care for and improve the environment, including wildlife habitats. Via regular dialogue between the team and contacts in Natural England/Defra, the research of Bourke and collaborators [R1-R3] provided a key component of the evidence base for Countryside Stewardship's pollinator-focused actions. In particular, the team's finding [R2] that a coverage of 1-3% of agricultural landscape by flower-rich habitat would allow bumblebee workers to forage at or below their species-average foraging distance directly informed the Wild Pollinator and Farm Wildlife Package within Countryside Stewardship. This Package is the set of farmland management options, including the planting of floral margins alongside arable fields, designed to benefit wild pollinators and other farm wildlife. Specifically, the finding defined the minimum area threshold for option coverage within the Package, i.e., at least 3% total area to be planted with floral margins, this threshold being mandatory for the scheme's Mid-Tier version or higher [S1]. It also informed the package's advice to select a combination of options and to distribute them spatially within farms [S1]. Evidencing this, the Countryside Stewardship Manual stated, "Recent evidence suggests that applying the right combination of options over 3 to 5% of the arable, temporary grass or permanent grass included in an application will deliver meaningful benefits to farm wildlife" [S1]. In addition, as Natural England's Nature Recovery Team stated, "The research findings of the IPI bumble bee project team helped to set the 3% minimum threshold for option coverage in the CS Wild Pollinator and Farm Wildlife Package" [S2]. Moreover, the package has "helped in an overall increase in the delivery of land management options such as flower-rich grass margins and pollen and nectar mixes, which are crucially important in helping to provide the year-round life cycle needs of pollinating insects" [S2]. Although it is too early to determine if any interventions since 2015 have increased UK bee numbers, a 2019 study concluded that, against general trends for pollinators, crop-pollinating bees increased by 12% in Britain between 1980 and 2013 and that this could be due to previous agri-environment schemes, which were similar in kind if not in scale to those implemented by Countryside Stewardship [S3].

Stimulating global policy development to aid pollinators: Dicks's research has had a suite of primary and downstream impacts stimulating and influencing the policy and practice of governments and international agencies as regards safeguarding pollinators and pollination services, so benefiting agricultural practitioners and the environment on a global scale.

The primary impact has been that the UN's multilateral treaty body for biodiversity, the Convention on Biological Diversity, agreed two formal decisions that draw heavily on the work of the global IPBES pollinator assessment [S4] and outputs [R4-R6] co-authored by Dicks [S5]. This followed an approach to Dicks and co-authors by the secretariat of the Convention [S5]. As a UN treaty, this Convention has 196 party countries and 168 signatories. Its Decision XIII/15 [S6], taken at the Convention conference in Mexico in late 2016 (COP13), formally endorsed the key messages of the assessment [S4] that were included and further developed in [R4] and [R5]. It also listed specific actions for Governments to follow, and these included all 10 policy recommendations in [R5]. In short, each policy recommendation in [R5] by Dicks and collaborators has been incorporated into a formal decision of a UN treaty body [S6]. As the Deputy Executive Secretary of the Convention on Biological Diversity stated, "… I approached a number of the authors [of the IPBES assessment] , including Dr. Dicks, for scientific inputs in drafting policy recommendations for Governments with a view to including these in a draft SBSTTA [Subsidiary Body on Scientific, Technical and Technological Advice to the Convention] recommendation. … At the same time, Dr. Dicks led the development of a scientific paper published as [Dicks et al. 2016 Science, R5] . The thinking behind the paper informed the development of the SBSTTA policy recommendations, and indeed, the policy recommendations in the Science paper and the SBSTTA recommendations are very closely aligned. The paper [R5] also helped … give added scientific weight to the Convention's draft recommendations, helping their formal adoption by Governments at the thirteenth meeting of the Conference of the Parties [COP13] . With only minor changes, the policy recommendations were subsequently adopted by the COP as decision XIII/15 in December 2016" [S5].

Following up, in a further decision on pollinators, Decision 14/6 [S7] taken at the Convention on Biological Diversity's conference in Egypt in 2018 (COP14), the Convention mandated the UN's Food and Agriculture Organisation to implement a joint Plan of Action for the conservation and sustainable use of pollinators. This plan [S7] again included the actions recommended by [R5], and cited [R6] as major support, i.e. Dicks's collaborative research synthesising the contributions of pollinators beyond their agricultural value such as value for society and quality of life.

Prompted by the Convention on Biological Diversity's formal Decision XIII/15, two major, global-scale downstream impacts have also occurred. One is that a collaboration of Governments across the world created "Promote Pollinators, a Coalition of the Willing on Pollinators". With a founding membership (including the UK) of 14 countries in 2016, by 2020 this coalition included 30 countries, each committed to developing its own national pollinator strategy [S8]. Evidencing this, its website states: "Promote Pollinators was established in December 2016 as the result of deliberations during [COP13, = Decision XIII/15 conference] . During this conference, …, fourteen countries decided to unite and collaborate in an international coalition, in order to bring about progress in the protection of pollinating species and their habitats" [S8]. The other downstream impact is that, in 2018, citing Decision XIII/15, the European Commission launched its own European Union Pollinators Initiative [S9]. This is an EU-wide strategy to address pollinator declines across Europe, which from January 2019 has been implemented in collaboration with the International Union for the Conservation of Nature and the Institute for European Environmental Policy [S10].

Overall, both the primary and downstream impacts of the work of Dicks and collaborators have had a positive and ongoing effect on UN and Government actions for pollinators. As the Deputy Executive Secretary of the Convention on Biological Diversity has stated, Decision XIII/15, [S4] and [R5] "have fostered increased efforts by Governments and stakeholders on this crucial issue for biodiversity, and the issue of pollinators and pollination is likely to feature explicitly in the post-2020 global biodiversity framework currently in development under the Convention" [S5].

5. Sources to corroborate the impact

  1. Natural England/Defra (2017) Countryside Stewardship Manual. Revised November 2017. [Wild Pollinator and Farm Wildlife Package is in Section 6.3; quote is from p. 53.]

  2. Letter from the Nature Recovery Team, Natural England (28.11.20).

  3. Powney GD et al. (2019) Widespread losses of pollinating insects in Britain. Nature Communications 10, 1018. doi.org/10.1038/s41467-019-08974-9. [12% statement is on p. 3.]

  4. IPBES (2016) The assessment report of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services on pollinators, pollination and food production. Potts SG, Imperatriz-Fonseca VL, Ngo HT (eds) Secretariat of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services, Bonn, Germany. [ Dicks led the final chapter: Dicks LV, Viana BF, del Coro Arizmendi M, Bommarco R, Brosi B, Cunningham S, Galetto L, Lopes A, Hisatomo T (2016) Responses to risks and opportunities associated with pollinators and pollination. pp. 361-477.]

  5. Letter from the Deputy Executive Secretary, Convention on Biological Diversity (18.11.20).

  6. Convention on Biological Diversity, Decision XIII/15 ( Implications of the IPBES assessment on pollinators, pollination and food production for the work of the Convention, CBD/COP/DEC/XIII/15, 9.12.16). [Includes recommendations 1-10 of Dicks LV et al. (2016) [R5] in paragraphs 7m, 7j, 7m, 7h, 7q, 7p, 7b, 7c, 7t and 7y, respectively.]

  7. Convention on Biological Diversity, Decision 14/6 ( Conservation and sustainable use of pollinators, CBD/COP/DEC/14/6 30.11.18). [Cites Aizen … Dicks LV … et al. (2018) [R6] on p. 12.]

  8. Promote Pollinators - a Coalition of the Willing on Pollinators website (accessed 5.9.20). [Quote referencing Decision XIII/15 is on "About" page, page 3.]

  9. European Union Pollinators Initiative: Communication from the Commission to the European Parliament, the Council, the European Economic and Social Committee and the Committee of the Regions: EU Pollinators Initiative. Brussels, 1.6.2018, COM(2018) 395 final. Document 52018DC0395 [Cites Decision XIII/15 on page 1.]

  10. IUCN website, Pollinators in Europe pages from iucn.org (accessed 5.10.21) [Statement that IUCN and IEEP are helping implement EU Pollinators Initiative is in paragraph 4.]

Submitting institution
The University of East Anglia
Unit of assessment
5 - Biological Sciences
Summary impact type
Technological
Is this case study continued from a case study submitted in 2014?
Yes

1. Summary of the impact

Baulcombe and colleagues' ground-breaking discovery of small interfering RNA (siRNA) has proved transformative in drug design by permitting the development of drugs that treat previously "undruggable" diseases in humans. Specifically, this work has led to the development of four therapeutic drugs based on RNAi (RNA interference), ONPATTRO®, GIVLAARI®, OXLUMOTM and LEQVIO®. These have been designed to treat serious genetic disorders affecting many thousands of patients worldwide. The drugs realise the ability of RNAi to target disease-causing genes and represent the first RNAi-based therapeutics developed anywhere in the world. Over 1,300 patients have received ONPATTRO® and GIVLAARI®, with life-changing benefits. Many more will benefit from the recent approval of LEQVIO in the UK/EU. A patent issued to Baulcombe and colleagues for RNAi technology has generated GBP10,000,000 in licensing income, while the current impact of the global RNAi therapeutics sector is reflected in its growth in value to approximately USD1,090,000,000 (12-2018).

2. Underpinning research

Embedded image In 1990, plant molecular geneticists observed a strange phenomenon: when they inserted a gene controlling flower colour into the Petunia genome, it resulted in white flowers instead of the expected coloured ones. Work over the following years established that the inserted DNA caused gene "silencing", so launching the field of RNA interference (RNAi). RNAi is a cellular mechanism by which small RNA molecules can prevent the expression of individual genes by interfering with those genes' messenger RNA, i.e. silencing them. Various aspects of the molecular mechanisms underlying RNAi were discovered by different groups, with Baulcombe's laboratory making a number of seminal contributions.

For example, Baulcombe, Hamilton and colleagues demonstrated that gene silencing effects could spread within individual plants, between different cells and parts of the plant, and discovered the role of small antisense RNAs (25 nucleotides in size) in mediating RNAi in plants. Since 2000, they have also identified the key genes involved in the production of small antisense RNAs, specifically RNA-dependent RNA polymerase [R1], RNA helicase [R2], RNA polymerase IV [R3] and genes that bind small RNAs and slice target RNAs to mediate RNAi (ARGONAUTE [R4]). Moreover, they have characterised the role of the RNA polymerase PolIVb in siRNA biogenesis and RNA-directed DNA methylation [R5]. This body of research, supported by Grants A-D, underpinned the fundamental understanding of RNAi, a process that is shared across eukaryotic organisms (animals, plants, fungi and protists).

In REF2014, the unit submitted an impact case study based on Baulcombe's RNAi research that focused on the impact it had through enabling commercial design, production and sale of synthetic siRNAs as reagents by biotechnology companies ( *"Small interfering RNA – a change in the landscape of biotechnology"*). In the current case study, we are excited to be able to focus on a new set of significant, far-reaching impacts that the research has had since REF2014. Specifically, because RNAi can be used to silence individual genes in a targeted manner, Baulcombe and colleagues' pioneering discoveries have helped open up a completely new domain of innovation in drug development, namely a novel method for targeting genetic diseases in humans.

Many serious human diseases are genetic ones, being caused by abnormalities in the genome such as an altered chromosome number or gene mutations. So-called autosomal dominant diseases can be inherited from either parent acting as a carrier of the mutated gene and thereby contributing to the transmission and expression of the disorder in their children. The mutated genes result in the production of abnormal proteins that impair or alter their usual function within the cell in a harmful manner. Many such proteins were considered "undruggable", i.e. harmful proteins that cannot be targeted pharmacologically by classic methods such as the use of antibodies. RNAi has provided a means of treating such human diseases, previously considered intractable. Indeed, until now only the symptoms, not the causes, could be treated. In this way, RNAi has created an entirely new approach to improving the health and wellbeing of people.

Recognising the broader potential impact of their work, Baulcombe and colleagues filed for intellectual property on their discoveries on RNAi with Plant Biosciences Limited, an independent technology management company based on the Norwich Research Park, and this patent [R6] was then licensed to the US biopharmaceutical company Alnylam Pharmaceuticals Inc. to develop RNAi-based therapeutics.

Image: Argonaute protein (Argonaute homologue Aq 1447); Credit: Jawahar Swaminathan and MSD staff at the European Bioinformatics Institute ( ebi.ac.uk/), Public domain, via Wikimedia Commons ( commons.wikimedia.org/wiki/File:PDB_1yvu_EBI.jpg).

3. References to the research

Underpinning research: Six key outputs report the underpinning research - five papers in competitive, international, peer-reviewed journals and one patent [R6]. Collectively, the papers have been cited over 3,870 times (citation numbers are from Google Scholar; UEA author names are in bold):

  1. Dalmay T, Hamilton A, Rudd S, Angell S, Baulcombe DC ( 2000) An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell 101: 543-553. DOI: 10.1016/S0092-8674(00)80864-8 [1,317 citations]

  2. Dalmay T, Horsefield R, Braunstein TH, Baulcombe DC ( 2001) SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis. EMBO Journal 20: 2069-2078. DOI: 10.1093/emboj/20.8.2069 [455 citations]

  3. Herr AJ, Jensen MB, Dalmay T, Baulcombe DC ( 2005) RNA polymerase IV directs silencing of endogenous DNA. Science 308: 118-120. DOI: 10.1126/science.1106910 [759 citations]

  4. Baumberger N, Baulcombe DC ( 2005) Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. Proceedings of the National Academy of Sciences USA 102: 11928-11933. DOI: 10.1073/pnas.0505461102 [1,073 citations]

  5. Mosher R, Schwach F, Studholme D, Baulcombe DC ( 2008) PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis. Proceedings of the National Academy of Sciences USA 105: 3145-3150. DOI: 10.1073/pnas.0709632105 [271 citations]

  6. Baulcombe DC, Hamilton AJ. Gene silencing. US patent number: 8,097,710. Publication date: 4.11.04. Granted date: 17.1.12. Available at: patents.google.com/patent/US8097710B2/en

Funding: Funding of the research has come from core funding to The Sainsbury Laboratory from the Gatsby Charitable Foundation and competitive, peer-reviewed sources including UKRI and the EU: Grant A: PI: D Baulcombe (lead). Title: Composition of plant virus RNA replicase (COMREP). Funder: EU FP4-BIOTECH 2. Project dates: 1 October 1997 – 30 September 2000. Total value: GBP158,533; Grant B: PI: D Baulcombe (lead). Title: Identification of foreign replicons and host genes naturally targeted by post-transcriptional gene silencing. Funder: BBSRC. Project dates: 1 May 2001 – 30 April 2004. Total value: GBP173,580; Grant C: PI: D Baulcombe (lead). Title: Factors affecting gene silencing in plants using tobacco rattle virus. Funder: BBSRC. Project dates: 5 June 2001 – 4 June 2004. Total value: GBP204,336; Grant D: PI: D Baulcombe (lead). Title: Silencing RNAs: organisers and coordinators of complexity in eukaryotic organisms (SIROCCO). Funder: EU FP6-LIFESCIHEALTH. Project dates: 1 January 2007 – 30 September 2011. Total value: EUR14,439,820 (GBP462,550 to UEA).

4. Details of the impact

Baulcombe’s research and its associated intellectual property have proved fundamental to the development of RNAi-based therapeutics that target previously intractable diseases [S1-S3]. Acting on behalf of Baulcombe and colleagues, Plant Bioscience Limited licensed Baulcombe's patent to Alnylam Pharmaceuticals [R6], and this has ensured Alnylam's freedom to operate, since 2013, to develop, trial and release three RNAi-based drugs that target human genetic disorders, along with a fourth to treat inherited high cholesterol (familial hypercholesterolemia) [S4]. In particular, to target genetic disorders, Alnylam has registered and commercialised the two drugs ONPATTRO® and GIVLAARI®, and it has obtained permission for early release of a third drug, OXLUMOTM, through the UK Medicines and Healthcare Products Regulatory Agency's Early Access to Medicines Scheme [S5] and the United States Food and Drug Administration (FDA) [S6]. It has also received approval of the familial hypercholesterolemia treatment drug LEQVIO® from the European Commission [S4].

As detailed below, these drugs are providing treatments that patients have described as transformative in their impact on individual lives [S4, S7-S9]. They have also helped underpin the growth of Alnylam Pharmaceuticals as a company and yielded important patent revenues. In this way, the research has had substantial impact on the health and wellbeing of people and on commerce and production in the health sector. As the Managing Director of Plant Bioscience Limited has stated, "the impact of the discovery of siRNAs and understanding of their role in RNAi interference contributed by Sir David Baulcombe and Dr Andrew Hamilton has opened up a new generation of therapeutics. After pioneering development by PBL’s licensing partners these are now having a huge impact across the world, in a wave of new and diverse treatments for previously intractable indications, treating millions of patients with a series of important life-threatening conditions." [S3].

ONPATTRO® (patisiran): The disease hereditary transthyretin-mediated amyloidosis (hATTR amyloidosis) is a life-threatening, autosomal dominant neurodegenerative disease driven by the deposition of misfolded transthyretin protein (TTR protein) in the heart, nerves and gastrointestinal tract. Approximately 50,000 people, aged mainly between 20 and 40, suffer from the disease worldwide [S4]. Without treatment, sufferers typically die between 5 and 15 years after the onset of symptoms. Treatment options are limited, and many cases remain undiagnosed. RNAi therapeutics allow transcripts (messenger RNA) from the faulty gene to be silenced, thereby decreasing the amount of misfolded TTR protein in the body. ONPATTRO® has been approved by the European Union and United States, along with Brazil, Canada, Israel, Japan, Switzerland and Taiwan, for the treatment of hATTR amyloidosis [S4]. Based on a large-scale randomised clinical trial, ONPATTRO® significantly reduced patients' symptoms and improved their quality of life, such as walking ability, nutritional status and the ability to perform activities of daily living [S7, S8]. As a result, as at the third quarter of 2020, over 1,150 patients were taking ONPATTRO® [S4]. In terms of improvement in quality of life, a patient treated with ONPATTRO® stated, "I'm so much more than this disease, and I can put it in its place and do the things that I love to do with the people who I most love and adore in my life." [S4].

GIVLAARI® (givosiran): Acute hepatic porphyria (AHP) consists of a group of four inherited diseases of the liver with acute neurovisceral symptoms that are often missed or delayed in diagnosis because the clinical symptoms mimic those of other common disorders. Acute intermittent porphyria is the most severe of the set, with 20% of patients with recurrent symptoms developing chronic and ongoing pain. It occurs in about 1 in 1,600 people with a Western European genetic background and, in the EU and US, the patient population is estimated at 3,000 people [S4]. Previously, long-term solutions for treatment involved either infusion with blood products (e.g. IV hemin) or liver transplantation. GIVLAARI® was developed to treat adults with acute hepatic porphyria and was approved by the US Food and Drug Administration in November 2019 [S4]. It has also been approved for use in the European Union, Brazil and Canada [S4]. This drug significantly reduces the rate of porphyria attacks that require hospitalisations, urgent healthcare visits or infusion with blood products at home. A patient receiving the drug for acute intermittent porphyria stated, “I've had pain for 10 years, I didn't expect that could go away. I'm seeing friends and they're [asking] 'you're not taking any painkillers?' and I was [saying] 'no!'.” [S9]. As at the third quarter of 2020, over 150 patients were being treated with GIVLAARI® [S4].

OXLUMOTM (lumasiran): This drug is an RNAi therapeutic for the treatment of primary hyperoxaluria type 1 (PH1). In the EU and US, the patient population is estimated at 3,000 symptomatic individuals [S4]. The disease is caused by the build-up of oxalate, which is normally excreted in the urine. In affected people, the accumulated oxalate is deposited in the kidneys and urinary tract, where it combines with calcium to form the main component of kidney and bladder stones (calcium oxalate). Lumasiran is currently under approval and has been granted a "positive scientific opinion" (i.e. approved for use by the National Health Service) through the UK Medicines and Healthcare Products Regulatory Agency's Early Access to Medicines Scheme [S5].

LEQVIO® (inclisiran): LEQVIO® is the first siRNA drug that reduces low-density lipoprotein cholesterol (LDL-C) in patients with familial hypercholesterolemia. Approximately 3,900,000 people die annually in Europe from cardiovascular disease, of which high cholesterol (hypercholesterolemia) is a leading cause. While reducing low-density lipoprotein cholesterol levels using statins is a common treatment for high-risk patents, the majority of these patients (80%) do not experience reductions to below recommended levels. LEQVIO® conferred effective and sustained low-density lipoprotein cholesterol reduction of up to 52% in patients. It was approved by the European Commission in December 2020 [S4]. It is estimated that approximately 50,000,000 people with atherosclerotic cardiovascular disease or familial hypercholesterolemia could benefit from treatment with LEQVIO ® in future [S4]. For example, in the UK, the Managing Director of Plant Bioscience Limited reported that: “NHS projections estimate the drug will save 30,000 lives for every 300,000 patients treated” [S3].

Overall, the scope of using RNAi for drug development is limited only by the identification of sequence targets relevant to a given disease. As such sequences are identified, drugs based on RNAi are being developed to target genes for an increasing range of diseases, including cancer (e.g. vascular endothelial growth factor, VEGF), and to target viruses underpinning viral diseases, including Hepatitis B and the recent pandemic disease COVID-19. Similarly, drugs targeting specific genes are being developed to treat diseases such as haemophilia, Alpha-1 liver disease, hypertension and cerebral amyloid angiopathy [S2, S4]. Hence, RNAi-based drug development has an extremely promising future.

Economic impact of RNAi-based therapeutics. As a young and rapidly growing development, the market in RNAi-based therapeutics has yet to realise its full economic potential. Nonetheless, in 2018, the global size of this market was already estimated to be approximately USD1,090,000,000 (12-2018) [S10]. RNAi drugs have also contributed substantially to the income and financial growth of Alnylam Pharmaceuticals. Specifically, for ONPATTRO®, the company's quarterly revenues increased from USD46,100,000 (12-2020) in the third quarter of 2019 to USD82,500,000 (12-2020) in the third quarter of 2020 [S4]. In addition, in the third quarter of 2020, GIVLAARI® earned the company USD16,700,000 (12-2020) [S4]. For Baulcombe and colleagues, the patent [R6] issued for RNAi technology and managed by Plant Bioscience Limited has generated GBP10,000,000 in licensing income since 01-2014 [S3].

5. Sources to corroborate the impact

  1. Setten RL, Rossi JJ, Han S (2019) The current state and future directions of RNAi-based therapeutics. Nature Reviews Drug Discovery 18: 421-446. DOI: 10.1038/s41573-019-0017-4

  2. Hu B et al. (2020) Therapeutic siRNA: state of the art. Signal Transduction and Targeted Therapy 5: 101. DOI: 10.1038/s41392-020-0207-x

  3. Letter from the Managing Director, Plant Bioscience Limited (16.2.21).

  4. Alnylam Pharmaceuticals R&D Day 2020, Day 1 presentations (15.12.20). Available at: investors.alnylam.com (accessed 30.12.20). [PDF pages: pp. 6, 9, 18, 28, 55 (Intro.); pp. 10, 28, 31, 32 (ONPATTRO®); pp. 6, 18, 33, 34 (GIVLAARI®); pp. 12, 35, 36 (OXLUMOTM); pp. 13, 23 (LEQVIO®); pp. 32, 34 (revenue)].

  5. UK Medicines and Healthcare Products Regulatory Agency (MHRA) scientific opinion through the Early Access to Medicines Scheme (EAMS) for Lumasiran (14.7.20) (accessed 30.12.20).

  6. News release from US Food and Drug Administration (from fda.gov) (23.11.20) (accessed 2.3.21).

  7. Adams D et al. (2018) Patisiran, an RNAi therapeutic, for hereditary transthyretin amyloidosis. New England Journal of Medicine 379: 11-21. DOI: 10.1056/NEJMoa1716153

  8. Obici L et al. (2020) Quality of life outcomes in APOLLO, the phase 3 trial of the RNAi therapeutic patisiran in patients with hereditary transthyretin-mediated amyloidosis. Amyloid 27: 153-162. DOI: 10.1080/13506129.2020.1730790

  9. BBC News article (2019) detailing the impact of a drug trial of givosiran on a UK patient (13.4.19). Available at: bbc.co.uk (accessed 30.12.20).

  10. Grand View Research market analysis report available at: grandviewresearch.com (June 2019) (accessed 30.12.20).

Showing impact case studies 1 to 6 of 6

Filter by higher education institution

UK regions
Select one or more of the following higher education institutions and then click Apply selected filters when you have finished.
No higher education institutions found.
Institutions

Filter by unit of assessment

Main panels
Select one or more of the following units of assessment and then click Apply selected filters when you have finished.
No unit of assessments found.
Units of assessment

Filter by continued case study

Select one or more of the following states and then click Apply selected filters when you have finished.

Filter by summary impact type

Select one or more of the following summary impact types and then click Apply selected filters when you have finished.

Filter by impact UK location

UK Countries
Select one or more of the following UK locations and then click Apply selected filters when you have finished.
No UK locations found.
Impact UK locations

Filter by impact global location

Continents
Select one or more of the following global locations and then click Apply selected filters when you have finished.
No global locations found.
Impact global locations

Filter by underpinning research subject

Subject areas
Select one or more of the following underpinning research subjects and then click Apply selected filters when you have finished.
No subjects found.
Underpinning research subjects