The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data
- Submitting institution
-
Liverpool John Moores University
- Unit of assessment
- 11 - Computer Science and Informatics
- Output identifier
- 985
- Type
- D - Journal article
- DOI
-
10.1186/s13059-017-1377-x
- Title of journal
- Genome Biology
- Article number
- ARTN 12
- First page
- -
- Volume
- 19
- Issue
- 1
- ISSN
- 1474-7596
- Open access status
- Compliant
- Month of publication
- January
- Year of publication
- 2018
- URL
-
-
- Supplementary information
-
-
- Request cross-referral to
- -
- Output has been delayed by COVID-19
- No
- COVID-19 affected output statement
- -
- Forensic science
- No
- Criminology
- No
- Interdisciplinary
- Yes
- Number of additional authors
-
9
- Research group(s)
-
-
- Citation count
- 11
- Proposed double-weighted
- No
- Reserve for an output with double weighting
- No
- Additional information
- The output is a continuation of BBSRC-funded grants (e.g., BB/L024128/1, £206k, 06/2014 - 12/2016). Two standards, proBAM and proBed, have been developed to address the challenge of integrating mass spectrometry-based proteomics data with genomics and transcriptomics information in proteogenomics studies. proBAM and proBed have been used in a proteomics tool ProteoAnnotator and integrated in several widely used genome browsers and other proteomics tools, e.g. PGConverter, ms-data-core-api, bedToBigBed and Ensembl genome browser (http://www.psidev.info/probed and http://www.psidev.info/probam).
- Author contribution statement
- -
- Non-English
- No
- English abstract
- -
