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Showing impact case studies 1 to 11 of 11
Submitting institution
Birkbeck College, Institute of Zoology, University College London (joint submission)
Unit of assessment
5 - Biological Sciences
Summary impact type
Technological
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

Novel antibodies represent approximately a third of all drugs in development. Research at UCL has led to creation of free, web-based computational tools to help pharmaceutical companies develop antibody-based drugs. Since 2013, ‘abYsis’ which allows investigators to analyze the features of novel antibodies has been accessed by more than 44,000 unique users, resulting in over 200 patent applications. Commercial licences, bought by large pharmaceutical companies and small biotechnology companies, generated revenues over GBP325,000 in 2019/20. The software is being used to settle patent disputes at the European Patent Commission and in one case, Professor Martin’s expert testimony saved Genentech over GBP600,000. His expertise also informs naming and annotation of antibody-based drugs for the World Health Organisation.

2. Underpinning research

Antibodies form a critical part of the body’s immune responses to infection. Scientists are exploiting their unique properties to develop new medicines. Antibodies are ‘Y’ shaped proteins whose function depends on their complex 3-D structure determined by their amino-acid sequence. They ‘lock-on’ to short peptide sequences or ‘antigens’ that the immune system targets as ‘foreign’. A third of all new medicines under development involve an antibody therapy, with ~100 licensed treatments for cancer, autoimmune disease and blood clotting, amongst others and over 200 in development for Covid-19 alone.

Professor Martin’s research has led to numerous widely used computational tools and databases to allow the analysis and prediction of antibody sequence and structure. His work has also helped model predicted antibodies and understand how the VH and VL domains (the most important regions of an antibody) pack together. His computational tools also allow investigators to assess how similar a particular antibody would be to a human antibody. The research has enabled pharmaceutical companies to develop antibody-based drugs.

In 2008 Martin’s team at UCL developed the first automated method for applying standard numbering schemes to antibody sequences. Applying these schemes to antibody sequences and structures is fundamental to analysing their properties [ R1] and hence to abYsis. The VH and VL domains of an antibody contain six complementarity determining region (CDR) loops that interact with antigen. Understanding what dictates how the two domains pack together and being able to predict the packing is critical when engineering and modelling antibodies. The UCL team went on to develop a machine learning method to predict the packing angle that helps predict the antibodies’ 3-D structure and allows key residues to be highlighted in abYsis that affect the packing, critical when engineering antibody-based drugs [ R2].

One issue with antibody-based medicines can be that the patient’s immune system recognises the new antibody proteins as ‘foreign’ and they are ‘rejected’. To address this, the UCL team developed methods for assessing the 'humanness' of antibodies by evaluating how similar they are to the expressed human repertoire [ R3]. This is integrated into abYsis and allows companies to recognize unusual sequences that may lead to rejection.

In 2009, building on the automated numbering system and tools the UCL team had developed, Martin released the first version of the abYsis antibody database; an integrated resource based around a relational database of sequence and structure data together with a set of tools for analysing new sequences. Since then, abYsis has undergone substantial development, including a new interface released in 2017 [ R4]. With support from BBSRC for commercialisation (2013-2014) the team developed software that allows investigators, for the first time, to view sequence alignments on a web page and to sort sequences based on regions such as the CDR loops that form the combining site of an antibody [ R5]. This software, and other computational tools [ R6] developed by the UCL team have undergone continuous development and are now integral to abYsis.

3. References to the research

[R1] Abhinandan, K.R., Martin, A.C.R. (2008) Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains. Mol Immunol. **45:**3832-9.

doi:10.1016/j.molimm.2008.05.022. [186 citations]

[R2] Abhinandan, K.R., Martin, A.C.R. (2010) Analysis and prediction of VH/VL packing in antibodies. Protein Eng Des Sel. **23:**689-97. doi:10.1093/protein/gzq043. [79 citations]

[R3] Abhinandan, K,R,, Martin, A.C.R. (2007) Analyzing the "degree of humanness" of antibody sequences. J Mol Biol. **369:**852-62. doi:10.1016/j.jmb.2007.02.100 [82 citations]

[R4] Swindells, M.B., Porter, C.T., Couch, M., Hurst, J., Abhinandan, K.R., Nielsen, J.H., Macindoe, G., Hetherington, J. and Martin, A.C.R. (2017) abYsis: integrated antibody sequence and structure – management, analysis and prediction. J Mol Biol **429:**356-364. doi:10.1016/j.jmb.2016.08.019 [65 citations]

[R5] Martin, A.C.R. (2014) Viewing multiple sequence alignments with the Javascript sequence alignment viewer (JSAV). F1000Research **3:**249. doi:10.12688/f1000research.5486.1 [10 citations]

[R6] Porter, C.T. and Martin, A.C.R. (2015) BiopLib and BiopTools – a C programming library and toolset for manipulating protein structure. Bioinformatics **31:**4017-4019. doi:10.1093/bioinformatics/btv482 [14 citations]

4. Details of the impact

Antibody-based drugs are a major growth area for pharmaceutical companies. The freely accessible abYsis software, developed at UCL, is a web-based analytical tool that has helped accelerate drug development. [ S1]. Over 40 biotech companies have used the software in their drug design work and since 2013, more than 200 patents applications have cited abYsis. In addition, patent lawyers, courts and the WHO are using the evidence and analysis provided by the software and presented by Professor Martin, to resolve patent disputes and standardise naming of antibody-based drugs.

Use of abYsis by biotech companies to accelerate drug development and patent lawyers to resolve patent disputes

AbYsis allows users to compare their antibody sequence data with sequences stored in databases such as Genbank or trEMBL, together with structural data from the Protein Data Bank. Comparing sequences allows researchers to identify unique or unusual features of their antibody sequences. The abYsis web site ( www.abysis.org) also allows users to determine how human-like the antibodies appear.

Since 2013 approximately 40 new companies have used the freely available software [ S2] and patent lawyers are also making significant use of the web site, including Fenwick, Morrison & Foerster, and Sheridan Ross.

Although abYsis is freely accessible online, commercial users can purchase a licence that allows them to store and analyse proprietary sequence and 3D structure data locally. Since 2013, seven major pharma (Lundbeck, Johnson and Johnson, Pfizer, Bayer, Teva, Boehringer Ingelheim and UCB) have bought commercial licences for the software together with more than 20 smaller biotechnology companies including AbCellera, Alexion Celldex, CytomX, Dragonfly, Eisai/KAN, Gilead, IBio Solutions, Imclone, Incyte Lake Pharma Harpoon, Ohana, Molecular Templates, Shionogi, StemCentrx, Surrozen-Arcus Biosciences, SutroBio, Tizona, Twist Bioscience, Versau. Revenue generated in 2019/20 financial year was over GBP 325,000, with a gross total since 2013 of GBP 534,000. It is the largest grossing software sold by UCL Business [ S3].

The software has helped accelerate drug design by enabling companies to identify unusual features in their sequences and to improve strategies for humanisation [ S4-S7].For example, [TEXT REMOVED FOR PUBLICATION] state [ S4] that their “entire antibody engineering team uses this software for multiple applications”, that it has “facilitated many programs and is […] an in-expendable tool” reducing the time for these efforts “by at least 25%”. They have “successfully enhanced or humanized antibody leads that have or are currently entering the clinic”. Twist Bioscience state [ S5] that they “have used abYsis in the design of antibody libraries for in-house use [for development of drug leads] and for sale to customers”. They estimate the use of the software to result in a “50% saving in time”. They state that they have “employed >10 highly skilled staff to develop antibodies and libraries that all rely on using abYsis.” SutroBio have said that it is “a central tool […] for internal synthetic library designs” used by their “entire Protein Engineering team”. They estimate that they can do their analyses “3-4x faster than using alternative solutions” [ S6]. UCB have said that abYsis “continues to be an integral component […] to support the antibody design and development activities”. As a result it has “supported, in part, hundreds of Antibody design campaigns.” [ S7]

AbYsis software cited in patents underpinning drug development

The research underpinning the abYsis software has been cited in over 300 patent documents since 2013 [ S8] and ‘abYsis’ itself has been cited by more than 200 organisations making patent applications. Companies include Novartis, Immunogen, Kite Pharma Inc, Gilead Sciences Inc, Janssen Biotech Inc, Leucid Bio Ltd, MAB Immune diagnostics, Millenium Pharm Inc, Bristol Myers Squibb, Pfizer and Biogen as well commercial applications by KCL, Harvard College and Massachusetts Institute of Technology [ S8].

Providing expertise to the World Health Organization International Nonproprietary Names committee

In 2016, Professor Martin was invited to be an expert advisor to the WHO International Nonproprietery Names (INN) Committee, providing expertise on nonproprietary names for biologic drugs and antibodies in particular. As stated by the WHO, his “long career in research on antibodies and [his] expertise in the field enabled [him] to research and develop an annotation scheme that is computer-readable”. In 2018 Martin “performed some research on computational linguistics and developed a program that allows a rapid comparison of potential new antibody names against a database of existing names” and that “[t]his has been invaluable during INN Consultations to allow rapid comparisons as new names are discussed” [ S9] (manuscript in preparation).

Acting as an expert witness in court cases relating to patent disputes

The UCL team’s research and resources, including the abYsis tool have been used to provide expert testimony in patent disputes relating to equivalence and obviousness. Professor Martin has acted as an expert witness to provide evidence in written reports in at least 6 court cases. For example, between August 2013 and November 2014, Martin provided written evidence and attended the European Patent Commission for [TEXT REMOVED FOR PUBLICATION] in a dispute with [TEXT REMOVED FOR PUBLICATION] in an opposition to patent EP1725261 (Avidity IP) [ S10]. Between September 2017 and August 2018 Martin wrote a report for Genentech to demonstrate infringement of their patent in Brazil by Pró Genericós. This patent relates to Genentech’s blockbuster drug Avastin and resulted in the Brazilian court issuing an injunction against Pró Genericós to stop them producing these drugs. (Williams & Connolly) [ S11].

In a related dispute with Amgen in the US, Williams & Connolly stated that Martin “prepared reports related to infringement and patent validity” and “[h]ad it gone to trial, Dr. Martin would have been the primary witness to explain antibody humanization technology to an American jury” [ S11]. In a related dispute in Ireland, William Fry state that Martin’s “expertise in this highly complex area and [his] ability to clearly explain the technical issues involved meant that our team was confident [his] affidavit would assist the Court in understanding the background to and the subject matter of the proceedings”. [ S12]

In another case (May 2018–Jan 2019) Martin acted as an expert witness in the High Court for Genentech in their dispute with Lilly who were trying to have Genentech’s patent EP1641822B1 declared invalid. Marks & Clark [ S13] state that “based on Professor Martin’s evidence, Genentech was successful in overcoming a number of Lilly’s pleaded attacks on the validity of the patent and also in establishing that Lilly’s product fell within the scope of its claims” The judge wholly accepted Prof Martin’s evidence on this issue, the analysis for which was performed using the UCL team’s open source software. The statement also says: “some measure of the importance of [Martin’s] evidence may be gleaned from the deductions from Lilly’s recoverable costs that were ordered by the judge”. The costs payable by Genetech to Lilly were reduced by 11.5% as a result and amounted to GBP690,000.

In 2018, abYsis was selected as an Impact case by the BBSRC [ S14].

5. Sources to corroborate the impact

S1 AbYsis is available from http://www.e-lucid.com/i/software/bioinformatics/Abysis.html and through Ebisu (UK) http://www.chemogenomix.com/chemogenomix/Abysis.html. The latter website corroborates details of how the software is used.

S2 AC Immune, Aimm Therapeutics, Amgen, Apexigen, Asahi-Kasei, Astellas, Autolus, Benemae, Biomatters, Bio-techne, Biovitrum, Bristol-Myers Squibb, Chemical Computing Group, DrugDesignTech, FujiFilm, Gan & Lee, Genentech, Genm,ab, Genscript, Henlius, Immunogen, Innovent Bio, Innogent Laboratories, Johnson & Johnson, Jounce Therapeutix, Kaneka, Lilly, Lundbeck, Medicilon, Meiji, Merrimack Pharmaceuticals, Morphotek, Roche, Sanofi-Aventis, Shionogi, TX Cell (Sangamo), Xintrum Pharmaceuticals, and Zymeworks

S3 A report on Abysis income from UCL Business is available on request.

S4 Letter of support from Julian Chandler, Research Scientist II, Alexion Pharmaceuticals, Inc.

S5 Letter of support from Aaron Sato, Chief Scientific Officer, Biopharma, Twist Bioscience

S6 Letter of support from Hara Dilley, Associate Director, Scientific Data Management, Sutro Bioscience

S7 Letter of support from Phil Scordis, Data and Translational Sciences, Innovation Lead, UCB Celltech

S8 Search on ESPACE patent base (results reported 25.01.2021)

S9 Testimonials from WHO

S10 Confirmation by Richard Bisley at Avidity IP available on request

S11 Testimony from Williams & Connolly

S12 Testimony from William Fry

S13 Testimony from Marks & Clark

S14 https://bbsrc.ukri.org/research/impact/pharmaceuticals\-industry\-benefits\-from\-antibody\-sequence\-software/

Submitting institution
Birkbeck College, Institute of Zoology, University College London (joint submission)
Unit of assessment
5 - Biological Sciences
Summary impact type
Environmental
Is this case study continued from a case study submitted in 2014?
Yes

1. Summary of the impact

In response to the global biodiversity crisis, the Institute of Zoology (IOZ) and University College London (UCL) developed a suite of science-based metrics that have become globally influential tools for biodiversity assessment and leading indicators of the conservation status of the world’s species. These indicators are now used by several United Nations (UN) bodies to measure conservation status around the world. Specifically, they are used to report global biodiversity change and to track progress toward international targets (e.g. Sustainable Development goals) by intergovernmental bodies. These include the UN’s Global Biodiversity Outlook 4 (2014), and 5 (2020); the UN Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) global and regional assessments (2019); as well as for conservation assessments and planning by national and regional governments and conservation NGOs, for example the World Wide Fund for Nature (WWF), and Environment Canada.

2. Underpinning research

In 2010, the UN Convention on Biological Diversity Conference of the Parties adopted a set of targets – known as the Aichi Targets – to reduce the loss of biodiversity by 2020. Research undertaken at UCL and IOZ generated global-scale biodiversity indicators that better informed progress towards these targets and are now used routinely by governments and international bodies.

The IUCN Red List, which is based on criteria developed by our researchers at UCL and IOZ, has become a key information source for monitoring the status of global biodiversity. Over 100,000 species have now been assessed using the criteria, but it includes only a small sample of all species (estimated at closer to 10 million) and is biased towards well-studied vertebrates.

To address these problems, our researchers developed methods to track changes in extinction risk over time and a sampling approach for wider taxonomic coverage of the Red List Index (RLI): the Sampled Red List Index (SRLI, [R2]). The research addressed several key challenges, including determining which species groups should be included in the index, identifying minimum adequate sample sizes, and working out how to aggregate and weight the index. The resulting indicator assesses a representative set of species from a broader set of groups than other approaches (including invertebrates and plants) in a time- and cost-effective manner.

Our research demonstrated how to accurately apply this technique to a number of new taxonomic groups, including the first global assessment of Reptiles, identifying their global threats and conservation priorities [R5]. UCL researchers further developed a simulation approach to demonstrate that climate change impacts, which are widely considered one of the most important threats to biodiversity, can be accounted for using Red List criteria such as occupied area and population size [R6].

While the RLI records changes in species richness, it is a weak metric of changes in wild species abundance, which is especially important for ecosystem functioning and conservation management. Responding to this weakness, IoZ and UCL researchers developed an aggregated indicator of trends in species population abundances: the Living Planet Index (LPI; [R1]). The underpinning research investigated the statistical methods that could be used to aggregate large quantities of data on trends in wildlife populations and their threats, evaluated potential biases, and examined how the data could be disaggregated (e.g. geographically, taxonomically, regionally, and by thematic area). The LPI now contains over 27,000 population trends for 4,700 species, making it one of the largest databases on wildlife abundance trends in the world, underpinning a suite of research papers investigating wildlife responses to changes in land use, climate, habitat loss and utilisation.

Many conservation assessments require information that is at more local scale and is more easily linked to ecological structure and function. Working with collaborators, UCL researchers developed a third index: The Biodiversity Intactness Index (BII; [R4]). BII records changes in a local terrestrial site's biodiversity in the face of human land use and related pressures (https://www.predicts.org.uk/\), and now includes 666 studies and 47,044 species (over 2% of all species known to science). The BII indicator is based on novel global models of the impact of land use on local biodiversity [R3].

3. References to the research

[R1] Collen, B., Loh J., Holbrook, S., McRae, L., Amin, R., Baillie, J.E.M. (2009). ‘Monitoring change in vertebrate abundance: the Living Planet Index’. Conservation Biology. 23, 317-327. DOI: http://dx.doi.org/10.1111/j.1523-1739.2008.01117.x. (The underpinning science for the Living Planet Index, cited 372 times)

[R2] Baillie, J.E.M., Collen, B., Amin, R., Akcakaya, H.R., Butchart, S.H.M., Brummit, N., Meagher, T.R., Ram, M., Hilton-Taylor, C., Mace, G.M. (2008). ‘Towards monitoring global biodiversity’. Conservation Letters. 1, 18-26. DOI: http://dx.doi.org/10.1111/j.1755-263X.2008.00009.x. (The science underpinning the Sampled approach to the Red List, cited 182 times)

[R3] Newbold, T., Hudson, L.N., Hill, S.L.L., Contu, S., Lysenko, I., Senior, R.A., Börger, L., Bennett, D.J., Choimes, A., Collen, B., Day, J., De Palma, A., Díaz, S., Echeverria-Londoño, S., Edgar, M.J., Feldman, A., Garon, M., Harrison, M.L.K., Alhusseini, T., Ingram, D.J., Itescu, Y., Kattge, J., Kemp, V., Kirkpatrick, L., Kleyer, M., Laginha Pinto Correia, D., Martin, C.D., Meiri, S., Novosolov, M., Pan, Y., Phillips, H.R.P., Purves, D.W., Robinson, A., Simpson, J., Tuck, S.L., Weiher, E., White, H.J., Ewers, R.M., Mace, G.M., Scharlemann, J.P.W. & Purvis, A. (2015). Global effects of land use on local terrestrial biodiversity. Nature 520: 45-50. DOI: http://doi.org/10.1038/nature14324. (the underpinning science for Biodiversity Intactness Index, cited 1791 times)

[R4] Newbold, T., Hudson, L.N., Arnell, A.P., Contu, S., De Palma, A., Ferrier, S., Hill, S.L.L., Hoskins, A.J., Lysenko, I., Phillips, H.R.P., Burton, V.J., Chng, C.W.T., Emerson, S., Gao, D., Pask-Hale, G., Hutton, J., Jung, M., Sanchez-Ortiz, K., Simmons, B.I., Whitmee, S., Zhang, H., Scharlemann, J.P.W. & Purvis, A. (2016). ‘Has land use pushed terrestrial biodiversity beyond the planetary boundary? A global assessment’. Science. 353, 288-291. DOI: http://doi.org/10.1126/science.aaf2201. (Cited 559 times)

[R5] Böhm M, Collen B, Baillie JE, Bowles P, Chanson J, Cox N, Hammerson G, Hoffmann M, Livingstone SR, Ram M, Rhodin AG (2013). ‘The conservation status of the world’s reptiles’. Biological Conservation. 157, 372-85. DOI: (Assessment of Sample of Reptile species paper – taxonomic broadening, cited 700 times)

[R6] Pearson RG, Stanton JC, Shoemaker KT, Aiello Lammens ME, Ersts PJ, Horning N, Fordham DA, Raxworthy CJ, Ryu HY, McNees J, Akcakaya HR 2014. Life History and Spatial Traits Predict Extinction Risk Due to Climate Change. Nature Climate Change 4 (3): 217–21. DOI : https://doi.org/10.1038/nclimate2113. (underpinning research for understanding the role of Climate change , cited 284 times)

4. Details of the impact

Impacts on international policy-making

Establishing international biodiversity baselines and metrics: The indicators that we developed at UCL and IOZ have been instrumental in establishing baseline measures that underpin key international treaties and targets on biodiversity, which must be met if we are to mitigate the ongoing catastrophic decline in the planet’s biodiversity. The indices have been used to track progress towards these critical targets, making signatory countries and other political and economic actors accountable for progress towards these goals and indicating priority areas for action.

Our research has underpinned the frameworks for measuring biodiversity of several international treaty organisations and conservation observatories. The LPI and SRLI have both been used to track progress towards meeting the UN Convention on Biological Diversity (CBD) targets in 2014 and 2020. They are quoted by the UN Global Biodiversity Outlook report as authoritative measures of the speed of biodiversity decline, for example in the report’s section on progress towards the goals of the Strategic Plan and the Aichi Biodiversity Targets (goal C, improving biodiversity status): “Two indicators of the state of biodiversity within this goal, the Living Planet Index and the Red List Index, show current declines and an extrapolation of continuing decline to 2020 based on current drivers.” [S1] . The two indices have also been highlighted as indicators for the post-2020 global target framework [S1]. The Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) has also used the LPI, RLI and BII to quantify trends in biodiversity in its Global Assessment report on Biodiversity and Ecosystem Services [S2]. The SRLI has, for the first time, enabled the IPBES to quantify the threat to particular species and families and to communicate these figures in ways that make clear to laypeople the urgency and scale of threat to particular types of plants and animals. For example, the SRLI revealed that 18.99% of Reptiles are threatened with extinction and 40.55% of conifer trees and their relatives are threatened [S2, page 53]. Evidence from these indices have underpinned the IPBES’ grave warning that “around a million animal and plant species are currently threatened” [S2, page 6].

Additionally the International Union for the Conservation of Nature (IUCN), the global authority on the status of the natural world and the measures needed to safeguard it, states that the IoZ/UCL work on the Red List and biodiversity indices “has had, and continues to have, significant impact on [their] understanding of extinction risk and global biodiversity” [S3].

Monitoring and conservation impact: As well as influencing global biodiversity monitoring and targets, IoZ/UCL research has led to new species-level IUCN monitoring and conservation efforts. As the global authority on the status of the natural world and conservation with over 1,400 member organisations and signatory governments, the IUCN maintains the Red List, the world’s most comprehensive index on the extinction risk of animal, fungus and plant species. Revisions and refinements to the Sampled Red List by the our researchers has been used to determine the extinction risk of groups such as reptiles, which were not previously represented. This led to the assessment of 1,500 species and their subsequent listing on the IUCN Red List. New IUCN guidelines drawing on this research have also been established for assessing species vulnerability to climate change (section 12.1 of the IUCN Guidelines for Using the Red List Categories and Criteria) and this led to the creation of the IUCN climate change impacts modelling group, chaired by UCL researcher Pearson. For example the IUCN listed Coffee arabica, which is a highly valuable crop, as endangered in 2018 following review of climate change impact models by the group [S3].

All three metrics (LPI, BII, RLI) underpinned the WWF’s flagship biennial report, the ‘Living Planet Report’ in 2016 and 2018 [S4]. This report has a global reach: it is published in 110 countries and in more than 20 languages, and it is estimated that the press coverage reach was over 100 million people [S4]. In the UK, biodiversity loss figures from our indicators found in this report were cited as the impetus for an Early Day Motion on Global Biodiversity in the House of Commons on 31 October 2016: “The catalyst for this debate was the Living Planet Report, prepared by the World Wildlife Fund and the Zoological Society of London, that shows that the global wildlife population fell by more than half between 1970 and 2012.” [S5] As a result of this debate, 41 MPs signed a motion urging the UK government to tackle the effects of climate change, habitat loss and degradation, species over-exploitation, pollution and animal diseases [S5].

The indicators developed at both UCL and IoZ (BII and LPI indices) informed the UN Environment Programme’s assessment of the state of the environment, ‘Global Environment Outlook 6’ (2019) which explained the indices’ ability to create a more nuanced and accurate picture of biodiversity and species loss than previous measures:

“...these indicators provide finer spatial and temporal resolution. Trends in global vertebrate species population abundances as measured by the Living Planet Index show an average decline of 60 per cent between 1970 and 2014 Globally, average local abundance of terrestrial species is estimated to have fallen to 85 per cent of modelled abundances in the absence of anthropogenic land-use change (Newbold et al. 2016)” [S6, page 156].

Research on these indices has thus led to a step-change in international environmental policy, whereby measures of biodiversity loss can be presented with confidence, informed and binding targets can be set and progress towards recovery can be accurately assessed.

Influencing regional and national policy-making

As a result of the widespread adoption of the tools developed at IoZ/UCL by major international and intergovernmental organisations, our researchers have undertaken commissioned assessments of biodiversity for a range of thematic groups across the world, including in:

The Arctic: The Arctic Species Trend Index [S7] was commissioned by the Arctic Council and the Conservation of Arctic Flora and Fauna (CAFF), based upon the methodology and dataset developed for the LPI. CAFF have described this as “a new method and the first species indicator to understand and monitor the biodiversity of the Arctic” [S12].

European wetlands: The LPI methodology and open-source tools were also used to produce the Wetland Extent Index [S8].

Rewilding Europe: Further adaptation of these tools underpinned a Rewilding Europe project on extinction risk and abundance, and was presented in the ‘Wildlife Comeback in Europe’ report in 2013 [S9]. This report celebrated successful conservation efforts in 18 mammal and 19 bird species across the continent of Europe, and our indicators were used to assess the impact of these interventions and the lessons that could be learned from them for future projects and policy makers.

Canada: IoZ researchers also developed a series of regional assessments of biodiversity, again building upon the methodology and data developed for the global LPI. The Sustainability Directorate, Environment and Climate Change Canada and IoZ researchers collaborated to adapt the LPI methodology to establish the Canadian Species Index. This filled a gap in intelligence on vertebrate population changes across Canada and enabling the measurement of progress towards the Canadian Environmental Sustainability Indicators and the 2020 Biodiversity Goals and Targets for Canada [S10], now used by the Canadian Government to monitor national biodiversity trends [S10].

Australia: In Australia, IoZ researchers collaborated with the nation’s Threatened Species Recovery Hub and the University of Queensland to help develop the Australian Threatened Species Index (TSX) to track wildlife abundance of threatened species there.

UK: The Biodiversity Intactness Index of the UK, developed by UCL researchers, was featured in the UK’s ‘State of Nature Report’ (2016), an annual snapshot of the state of the UK’s biodiversity assembled from data from over 50 organisations [S11].

5. Sources to corroborate the impact

[S1] Secretariat of the Convention on Biological Diversity (2014) ‘Global Biodiversity Outlook 4’. Montréal, 155 pages. https://www.cbd.int/gbo/gbo4/publication/gbo4-en.pdfand Convention on Biological Diversity CBD/WG2020/2/3/Add.1 Preliminary Draft Monitoring Framework for the goals and preliminary draft monitoring framework for targets. https://www.cbd.int/doc/c/2f5f/ea7d/3c7ff4e05fb89094a2222144/wg2020-02-03-add1-en.pdf

[S2] IPBES (2019): ‘Global assessment report on biodiversity and ecosystem services of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services’. E. S. Brondizio, J. Settele, S. Díaz, and H. T. Ngo (editors). IPBES secretariat, Bonn, Germany. https://ipbes.net/global\-assessment

[S3] Letter of Support from Craig Hilton-Taylor, Head of Red List Unit, IUCN Global Species Programme.

[S4] WWF (2018) Living Planet Report 2018: Aiming higher (eds. Grooten N & Almond REA). WWF, Gland, Switzerland. Letter of Support from Rosamunde Almond, Editor in Chief, Living Planet Report, WWF.

[S5] Early day motion #624. Tabled 31 October 2016 (2016-17 Session) https://edm.parliament.uk/early-day-motion/49877/global-biodiversity “That this House has considered in full the contents of the WWF Living Planet Report 2016 and recognises the significant threat presented to the natural world through a 58 per cent decline in the recorded global populations of fish, birds, mammals and amphibians from 1970 to 2012” https://hansard.parliament.uk/Commons/2016\-11\-01/debates/A42AE11E\-B9CE\-41EF\-931B\-F83A384B75AB/GlobalBiodiversity?highlight=early%20day%20motion%20624\#contribution\-FED3142A\-7BE2\-4183\-BB8D\-5BDE37CB7947

[S6] UN Environment (2019). ‘Global Environment Outlook – GEO-6: Healthy Planet, Healthy People.’ Nairobi. DOI 10.1017/9781108627146.

[S7] Deinet S, Zöckler C, Jacoby D, Tresize E, Marconi V, McRae L, Svoboda M, & Barry T (2015). ‘The Arctic Species Trend Index: Migratory Birds Index’ . Conservation of Arctic Flora and Fauna, Akureyri, Iceland.

[S8] Dixon, M. J. R., Loh, J., Davidson, N. C., Beltrame, C., Freeman, R., & Walpole, M. (2016). Tracking global change in ecosystem area: The Wetland Extent Trends index. Biological Conservation, 193, 27-35.

[S9] Deinet S, Ieronymidou C, McRae L, Burfield IJ, Foppen RP, Collen B, & Böhm M. (2013) ‘Wildlife comeback in Europe: the recovery of selected mammal and bird species’. Final report to Rewilding Europe by ZSL, BirdLife International and the European Bird Census Council. London, UK: ZSL.

[S10] Environment and Climate Change Canada (2019) Canadian Environmental Sustainability Indicators: Canadian species index. Consulted on August 30th, 2020. Available at: www.canada.ca/en/environment-climate-change/services/environmental-indicators/canadianspecies-index.html. Letter of Support from Environment and Climate Change Canada.

[S11] Hayhow, D.B., Burns, F., Eaton, M.A., et al., 2016. State of Nature 2016. State of Nature Partnership.

[S12] Letter of support from Arctic Council and the Conservation of Arctic Flora and Fauna (CAFF)

Submitting institution
Birkbeck College, Institute of Zoology, University College London (joint submission)
Unit of assessment
5 - Biological Sciences
Summary impact type
Technological
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

The CATH (Class, Architecture, Topology (fold family), Homologous superfamily) classification of protein domains, was developed at UCL’s Institute of Structural and Molecular Biology by Professors Christine Orengo and Janet Thornton. This led to the development of the UCL-hosted online CATH database, which receives >22,500 unique visitors per month. CATH is also a partner resource in InterPro – the most frequently accessed protein function annotation server, with approximately 716,000 unique visitors per year. Outside academia, CATH is widely used across the global pharmaceutical industry for drug design and research and development. It is also used to assess impacts of mutations in proteins supporting clinical diagnostics (e.g. hypercholesterolemia). CATH has informed policy on the host range of SARS-CoV2, and led to significant efficiencies in drug discovery.

2. Underpinning research

Proteins are involved in all major biological processes. Knowing their structure and function is essential for detecting pathogenic changes, for example mutations in protein sites, and for designing drugs. However, less than 10% of proteins have detailed experimental characterisation, even in humans. CATH algorithms predict the structures and functions of proteins by identifying evolutionarily related proteins (homologues), the properties of which are likely to be similar and which have already been experimentally characterised – such as in Drosophila (fruit flies) or C. elegans (nematode worms).

The accuracy of functional inheritance in CATH is enhanced by explicitly sub-classifying evolutionary superfamilies into functional families (FunFams). This is done using entropy-based algorithms to distinguish groups of relatives having differentially conserved residues likely to be important for function (FunSites) [R1, R2].

In a medical context, knowing how close disease-associated mutations are to functional sites (FunSites) can explain their damaging effects and suggest likely pathogenesis. CATH algorithms exploited this evolutionary and functional data to detect putative cancer genes, data from which are valuable for personalised therapeutics [R3], and identified mutations implicated in antibiotic resistance. Furthermore, FunFams can facilitate drug repurposing to target disease genes, by providing valuable data for pharmaceutical companies interested in repurposing as a cost effective mechanism for selecting drugs. FunFams can also identify drug targets which are less likely to be associated with side effects [R4], providing information that is valuable for drug design. CATH methods and data are being exploited in the NHS-funded Genomics England Functional Effects Domain, and in a large-scale analysis of lung cancer data to uncover mechanisms of cancer evolution: the GBP 14m, 9-year Cancer Research UK-funded TracerX project.

FunFam classification also allows accurate detection of functionally important sites to guide mutagenesis experiments for synthetic biology and is being used to enhance functional sites in bacterial enzymes capable of degrading plastics and pesticides. It has also highlighted sites involved in SARS-CoV-2 infection [R5].

CATH computational approaches exploit very large-scale protein structure and sequence data. Homologues are grouped into superfamilies where structural and sequence similarity indicate descent from a common ancestor. Classification was initially based on structural data and Orengo and colleagues then developed sequence-based protocols to assign genome sequences to particular superfamilies, expanding the classification by >300-fold. CATH currently recognises 150 million domain sequences in approximately 5,500 superfamilies, accounting for approximately 70% of sequences from completed genomes and approximately 60% from human. It is widely used by researchers to infer structural and functional properties (papers cited >11,000 times).

Sub-classification into functional families (FunFams) considerably extended CATH’s value. Recent machine learning algorithms have exploited FunFams to improve detection of functional sites (FunSites) [R2] and FunSites are being incorporated in two highly accessed resources (PDBe, with 60,000 users per month and UniProt, with 135,000 users per month at the European Bioinformatics Institute). Both capture this data to facilitate disease diagnostics and personalised medicine.

CATH is the only resource which is capable of performing functional sub-classification on such a large scale, identifying 220,000 families each with at least one experimentally characterised protein. Validation has shown high structural and functional coherence across FunFams, allowing much more accurate predictions to be made. CATH methods ranked in the top three (out of 150) in international assessments of molecular function prediction [R6], and first in 2020.

CATH was integrated with another world leading structure classification, SCOP, to give the most comprehensive protein structure classification information available (Genome3D) providing consensus structural data valuable for pharma and biotech companies.

3. References to the research

[R1] Das, S., Lee, D., Sillitoe, I., Dawson, N.L., Lees, J.G., Orengo, C.A. (2015). ‘ Functional classification of CATH superfamilies: a domain-based approach for protein function annotation’. Bioinformatics. 31(21), 3460-7. DOI: http://doi.org/10.1093/bioinformatics/btv398. Epub 2015 Jul 2.PMID: 26139634.

[R2] Das, S., Scholes, H.M., Sen, N., Orengo, C. (2020). ‘CATH functional families predict functional sites in proteins’. Bioinformatics. Nov 2:btaa937. DOI: http://doi.org/10.1093/bioinformatics/btaa937. Online ahead of print. PMID: 33135053.

[R3] Ashford, P., Pang, C.S.M., Moya-García, A.A., Adeyelu, T., Orengo, C.A. (2019). ‘A CATH domain functional family based approach to identify putative cancer driver genes and driver mutations’. Scientific Reports. 9(1), 263. DOI: http://doi.org/10.1038/s41598-018-36401-4.

[R4] Moya-García, A., Adeyelu, T., Kruger, F.A., Dawson, N.L., Lees, J.G., Overington, J.P., Orengo, C., Ranea, J.A.G. (2017). ‘Structural and Functional View of Polypharmacology’. Scientific Reports. 7(1), 10102. DOI: http://doi.org/10.1038/s41598-017-10012-x.

[R5] Lam, S.D., Bordin, N., Waman, V.P., Scholes, H.M., Ashford, P., Sen, N., van Dorp, L., Rauer, C., Dawson, N.L., Pang, C.S.M., Abbasian, M., Sillitoe, I., Edwards, S.J.L., Fraternali, F., Lees, J.G., Santini, J.M., Orengo, C.A. (2020). ‘SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals’. Scientific Reports. 10, 16471.DOI: http://doi.org/10.1038/s41598-020-71936-5

[R6] Zhou, N., Jiang, Y.,…Rost, B., Brenner, S.E., Orengo, C.A., Jeffery, C.J., Bosco, G., Hogan, D.A., Martin, M.J., O'Donovan, C., Mooney, S.D., Greene, C.S., Radivojac, P., Friedberg, I. (2019). ‘ The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens’. Genome Biology. 20(1), 244. DOI: http://doi.org/10.1186/s13059-019-1835-8.

4. Details of the impact

The CATH classification, made available on a UCL-hosted website maintained by the Orengo group, is an internationally renowned resource and one of the world’s leading protein structure classifications in this field [S1]. There are more than 22,500 unique web visits to CATH per month and 2,000,000 pages are accessed per month [S1]. Two-thirds of these web visits are from industry-based sites [S1]. CATH has been made an ELIXIR Europe-wide Core Data Resource (CDR) [S2], one of only three European national resources to be endorsed as meeting the highest standards in data quality and data access established by the ELIXIR (European Strategy Forum on Research and Innovation), - excellent science, community served, high quality of service and impact - and, notably, the only CDR to be endorsed in the UK . [TEXT REMOVED FOR PUBLICATION].

CATH data is further disseminated through the InterPro web server, at the European Bioinformatics Institute (EBI). Outside academia, InterPro is one of the most widely used web portals by biologists in industry, with over 723,000 unique visitors per year. It combines protein family data from multiple resources to assign greater confidence. CATH data is also disseminated via the web portal of the international protein structure resource, the Protein Databank (PDB), with over 4,411,871 unique users/year, and UniProt, a major source of protein functional data with over 10,800,000 unique users/year (2,220,00 of which are from industry). Further links to CATH are provided by many international web-based computational biology resources, for example Pfam, BRENDA [S1]).

CATH was one of four major resources used to establish the UCL spinout company Inpharmatica. It was also used by Inpharmatica to provide data and services for predicting protein structures and functions for large pharmaceutical companies including Pfizer, AstraZeneca, Merck and Glaxo-Wellcome [S3]. [TEXT REMOVED FOR PUBLICATION] Inpharmatica has since been acquired by biotechnology company Galapagos. Since 2013, Galapagos has attracted over GBP11,000,000 in investment [S4].

The structure comparison algorithms underpinning CATH (CATHEDRAL) have been distributed directly to pharmaceutical companies, including UCB Celltech and Cubist Pharmaceuticals, generating GBP34,931 in licence income to UCL within the census period [S5]. Papers published by Orengo have been cited across eight patent documents, demonstrating the commercial relevance of the work.

Users in industry exploit the CATH prediction methods, domain assignments and methods (e.g. CATHEDRAL) for analysing their structures. For example, R&D staff in DSM Chemical Technology R&D BV used CATHEDRAL to search CATH for structural homologues of a protein they were solving; a biocatalyst valuable for the pharmaceutical industry because of its ability to synthesis various beta-hydroxy amino acids - compounds widely used in food processing and drug development [S6].

Specific applications to problems in the pharmaceutical industry

Identifying disease drug targets: CATH is routinely used by the pharmaceutical industry to identify the structures of proteins implicated in disease. Predicted functional site data is used to assess the effects of disease-associated residue mutations and to identify putative ligand (i.e. drug) binding sites and variation in drug-binding modes across families. CATH has been used, for example, by:

  • Gene Tools LL and BrainMicro LLC, to identify domain boundaries in enzymes being structurally characterised as potential therapeutic targets for toxoplasmosis and other parasitic infections [S7];

  • Phylogica Ltd to search fold space in the characterisation of a peptide library used for target discovery, and for identifying new cell-penetrating peptides [S8];

  • Acpharis, to identify the domains of kinases - a major drug target family for pharmaceutical companies [S9]; and

  • AstraZeneca, for structural analyses that identified pharmacophore binding motifs for NAD (Nicotinamide adenine dinucleotide– an critical component in metabolism) and its analogues across different protein families [S10].

Biologic drug design: CATH data is also being used for biologics in large pharma companies. [TEXT REMOVED FOR PUBLICATION].

Pathogen protein structure-based drug design: CATH FunFam technology was exploited by NIH-funded, international, structural genomics initiatives (between 2013 and 2017) to select proteins from pathogenic organisms for structure determination to aid drug design. More than 2,400 protein structures were deposited into the Protein Databank from all sources, worldwide, during this period. These structures have shed light on how structure is linked to function and provided important details of binding sites in proteins implicated in cancer and pathogen associated diseases.

Covid-19: More recently, CATH FunFam analyses of binding sites involved in SARS-CoV-2 infection of animal hosts was used by the WHO and a UN Food and Agriculture Organisation policy unit [S11] in strategy discussions on animals at risk from infection, or which are likely to become reservoirs for the virus. These sites constitute major mechanisms of infection which are targetable by drugs. The work was also reported in several newspapers globally.

Orengo has given talks on CATH in Europe, the United States, Singapore, China, Malaysia, Africa and India, including the EBI Industry program and to computational biologists at several pharmaceutical companies.

5. Sources to corroborate the impact

[S1] CATH classification website: http://www.cathdb.info/

Web stats report, available on request; includes URLs for major resources linking to CATH including InterPro, PDB, UniProt, Pfam.

[S2] Letter from ,[TEXT REMOVED FOR PUBLICATION] confirming CATH is CDR and its usefulness.

[S3] Letter from [TEXT REMOVED FOR PUBLICATION]

[S4] Letter from [TEXT REMOVED FOR PUBLICATION].

[S5] A report from UCL Business PLC on commercial licences is available on request.

[S6] Paper - DOI: https://doi.org/10.1371/journal.pone.0124056

[S7] Paper - DOI: https://doi.org/10.3389/fcimb.2018.00352

[S8] Paper - DOI: https://doi.org/10.1016/j.cbpa.2017.03.016

[S9] Paper - DOI: https://doi.org/10.1021/acs.jmedchem.9b00089

[S10] Paper - DOI: https://www.ncbi.nlm.nih.gov/pubmed/23889609

[S11] UN FAO policy document titled ‘Exposure of humans or animals to SARS-CoV-2 from wild, livestock, companion and aquatic animals’ ( https://doi.org/10.4060/ca9959en)

Submitting institution
Birkbeck College, Institute of Zoology, University College London (joint submission)
Unit of assessment
5 - Biological Sciences
Summary impact type
Environmental
Is this case study continued from a case study submitted in 2014?
Yes

1. Summary of the impact

Amphibians are being lost at a global scale and at a rate far greater than any other vertebrate order. Institute of Zoology (IoZ) scientists were the first to show that two infectious diseases, chytridiomycosis and ranavirosis, are responsible for the global amphibian declines, and have been working ever since to respond to this crisis. They have further shown how globalization is contributing to the spread of the pathogens that cause these diseases and transformed their research into real-world applications that have changed policy, saved amphibians and fulfilled the UK’s international responsibilities to respond to the crisis. As a result of this work, IoZ researchers have trained scientists, built research capacity in multiple countries, developed diagnostic tools, and successfully campaigned for the diseases to be listed as notifiable diseases by the OIE (World Organization for Animal Health). Furthermore, their scientific outputs have underpinned the decision by the EU, USA, Canada and Caribbean states to enact trade restrictions to control disease and develop action plans to conserve the threatened species. Scientists at the IoZ are also some of the very few who are trialling strategies for mitigation in the field and the only ones who have reported significant successes.

2. Underpinning research

The global amphibian decline remains the worst example of biodiversity loss in vertebrates and is almost entirely attributable to human activities. For nearly 30 years, the Institute of Zoology (IoZ) has been at the forefront of work on infectious disease threats to amphibian biodiversity. Previously, amphibian conservation was wholly focussed on widely accepted threats, for example habitat loss, pollution and invasive species. However, work by IoZ scientists placed amphibian infectious disease firmly on the conservation map. Key research insights from IoZ scientists over the past two decades comprise: identifying the pathogens responsible for global amphibian declines; characterizing when these pathogens pose the greatest risk; and developing the strategies, informing policies and training the international cadre devoted to mitigating these diseases.

Identifying the pathogens responsible:

IoZ scientists are at the forefront of pathological investigations of the causes of wildlife mortality. This has played a pivotal role in establishing their credentials in wildlife epidemiology. Specifically, the work of IoZ researchers shows how two groups of pathogens (batrachochytrid fungi and ranaviruses) are consistently and globally associated with recurring amphibian mass mortality events that result in catastrophic population declines. In the case of infections with the Batrachochytrium dendrobatidis fungal species there have even been population extirpations and entire species have become extinct [R1, R2, R3, R4, R5].

Characterising when and where the pathogens pose the greatest risk:

IoZ researchers have identified which amphibian species are at greatest risk of extinction, which life history stages are most likely to manifest severe disease, and have characterised the habitats and environments where this is most likely to happen [R1, R2, R3, R4, R5]. They have illustrated key roles for habitat alteration and climate warming in exacerbating the effects of disease [R4, R5], and determined that not all pathogen isolates are equal, identifying the pathogen genotypes that are behind mass mortality events. Using this genetic information, Garner and Cunningham have also identified routes of invasion and the processes by which batrachochytrids and ranaviruses spread at national, regional and even global scales [R1, R2, R3]. They have shown the overwhelming role of trade and other human activities that are behind an ever-growing distribution of lethal batrachochytrids and ranaviruses [R3].

Trials to eliminate infection and disease:

The IoZ team have used their research to run two of the first field trials to reduce infection and disease in wild amphibian populations. Their work on Mallorca has led to the elimination of infections in one of two drainages where infections occurred, and ongoing efforts should lead to complete clearance from the island in the next years [R6]. On Montserrat, field trials led to short-term benefits that may provide the opportunity for frogs to tolerate infections long enough to reproduce and therefore bolster their severely reduced numbers.

3. References to the research

[R1] O’Hanlon, S.J., Rieux, A., Farrer, R.A., Rosa, G.M., Waldman, B., Bataille, A., Kosch, T.A., Murray, K., Brankovics, B., Fumagalli, M., Martin, M.D., Wales, N., Alvarado-Rybak, M., Berger, L., Böll, S., Brookes, L., Clare, F., Courtois, E.A., Cunningham, A.A., Doherty-Bone, T., Ghosh, P., Gower, D.J., Hintz, W.E., Höglund, J., Jenkinson, T.S., Lin, C-F., Laurila, A., Loyau, A., Martel, A., Meurling, S., Miaud, C., Minting, P., Pasmans, F., Schmeller, D., Schmidt, B.R., Shelton J., Skerratt L.F., Smith F., Soto-Azat C., Spagnoletti M., Tessa, G., Toledo, L.F., Valenzuela-Sánchez, A., Verster, R., Vörös, J., Wierzbicki, C., Wombwell, E., Zamudio, K.R., Aanensen, D.M., James, T.Y., Gilbert, M.T.P., Weldon, C., Bosch, J., Balloux, F., Garner, T.W.J., Fisher, M.C. (2018). ‘A 20th Century Out-of-Asia Origin of a panzootic threat to global amphibian biodiversity’. Science, 360, 621-627.DOI: http://doi.org/10.1126/science.aar1965 (165 citations)

[R2] Price, S.J., Garner, T.W.J., Nichols, R.A., Balloux, F., Ayres, C., Mora-Cabello de Alba, A., Bosch, J. (2014). ‘Collapse of amphibian communities due to an introduced Ranavirus’. Current Biology, 24, 2586-2591. DOI: https://doi.org/10.1016/j.cub.2014.09.028 (107 citations)

[R3] Martel, A., Blooi, M., Adriaensen, C., Van Rooij, P., Beukema, W., Fisher, M.C., Farrer, R.A., Schmidt, B.R., Tobler, U., Goka, K., Lips, K.R., Muletz, C., Zamudio, K., Bosch, J., Lötters, S., Wombwell, E., Garner, T.W.J., Cunningham, A.A., Spitzen-van der Sluijs, A., Salvidio, S., Ducatelle, R., Nishikawa, K., Nguyen, T.T., Kolby, J., Van Bocxlaer, I., Bossuyt, F., Pasmans, F. (2014). ‘Recent introduction of a chytrid fungus endangers Western Palearctic salamanders’. Science, 346, 630-631. DOI: http://doi.org/10.1126/science.1258268 (248 citations)

[R4] Bosch, J., Fernández-Beaskoetxea, S., Garner, T.W.J., Carrascal, L.M. (2018). ‘Long-term monitoring of an amphibian community after a climate change- and infectious disease-driven species extirpation’. Global Change Biology, 24, 2262-2232. DOI: http://doi.org/ 10.1111/gcb.14092 (19 citations)

[R5] Price, S.J., Leung, W.T.M., Owen, C.J., Puschendorf, R., Sergeant, C., Cunningham, A.A., Balloux, F., Garner, T.W.J., Nichols, R.A. (2019). ‘Effects of historic and projected climate change on the range and impacts of an emerging wildlife disease’. Global Change Biology, 25, 2648–2660. DOI: https://doi.org/10.1111/gcb.14651 (13 citations)

[R6] Bosch, J., Sanchez-Tomé, E., Fernández-Lora, A., Oliver, J.A., Fisher, M.C., Garner, T.W.J. (2015). ‘Successful elimination of a lethal wildlife infectious disease in nature’. Biology Letters, 11, 20150874. DOI: https://doi.org/10.1098/rsbl.2015.0874 (68 citations)

4. Details of the impact

Training and capacity-building in amphibian disease detection and treatment:

Since 2013, IoZ researchers and technical staff have trained over 40 amphibian disease researchers from across Europe, Africa, Latin America, the Caribbean, North America and Asia in methods for detecting infections and for isolating fungal and ranaviral isolates [E1]. They have also trained researchers in experimental procedures used for examining disease dynamics in amphibians [E2]. Trainees have applied what they learned to develop their careers at the PhD, post-doctoral and faculty levels. Former trainee Dr Xavier Harrison says “ the research arising from my fellowship at the IoZ was critical in allowing me to secure a permanent academic position at the University of Exeter”. Another, Dr. David Daversa says “ training was critical to my success as a PhD student and Postdoc” and Dr Vojtech Baláž says thanks to the gained skills and knowledge, I have got involved in multiple pathogen related research projects”. Several have established their own national pathogen surveillance programmes, including Professor Jacob Hoglund, who says: “ Without this assistance the first country-wide survey of [Batrachochytrium dendrobatidis] in Sweden….could not have been undertaken”. Trainees have established their own experimental facilities, diagnostic and detection facilities and NGOs, and in several cases acquired funding for their own research programmes in collaboration with IoZ scientists and as independent researchers [E2]. Dr Claudio Soto says he has been “ *awarded seven amphibian conservation project grants for work in Chile…..for USD540,000, including two consecutive Chilean Science and Technology Fund (the most prestigious scientific funding in Chile)*”.

In April 2019 IoZ scientists held a workshop on rapid decision making when disease outbreaks are identified. Contributors from across North America and Europe participated in the simulated emergency meeting and provided inputs that were i) used to manage the site the workshop was based on; ii) used in the management advice for the province in the Netherlands responsible for the management, as well as in the national action plan for B. salamandrivorans, written for the Dutch Ministry of Agriculture, Nature and Food Quality; and; iii) co-developed and shared with the United States Department of Interior inter-agency advisory task force on B. salamandrivorans “for uptake in subsequent management recommendations” [E3].

Meeting UK responsibilities for amphibian disease surveillance and reporting:

Chytridiomycete fungi and ranaviruses are the only OIE-listed pathogens that affect amphibians, and as an OIE member the UK is mandated to report cases of infection with either pathogen. The IoZ has been a partner of the government’s GB Wildlife Disease Surveillance Partnership (GBWDSP) since its inception in 2011 and is contracted to carry out national disease surveillance of amphibians. IoZ scientists accomplish this through the IoZ’s Garden Wildlife Health project, in which members of the public, ecological consultants and herpetologists are encouraged to submit observations of amphibian morbidity or mortality online. Where possible, the IoZ researchers obtain specimens for post-mortem examination to establish cause of death. Samples are collected as a routine to screen for chytridiomycete fungi and ranaviruses and results are included in the UK’s annual submission to the OIE. Novel findings on amphibian disease are communicated to the government’s Veterinary Risk Group and reported in quarterly open access GBWDSP reports [E4].

Raising awareness of best practice to safeguard wild amphibian health:

Incorporating the IoZ-founded Frog Mortality Project, the Garden Wildlife Health (GWH) project was launched in 2013: since this time citizen scientists have submitted approximately 2,000 amphibian disease incidents, and IoZ veterinarians have carried out approximately 600 amphibian post-mortem examinations. Running for 30 years, this is the longest-running citizen science amphibian health project globally. IoZ has converted surveillance findings and peer-reviewed studies to a library of 10 amphibian disease factsheets targeted at the public and fieldworkers, available via the GWH website. These provide science-based guidance for habitat management for amphibian disease prevention and control. This includes 2017’s Amphibian and Reptile Groups of the UK (ARG UK; 72 regional groups across the UK) and IoZ’s ‘Amphibian disease precautions: a guide for UK fieldworkers who are working with amphibians’ [E4]. In addition, in collaboration with a network of ten zoological organisations, NGOs, industry and government, IoZ researchers created the Amphibian Disease Alert to highlight the risk of B. salamandrivorans incursion to the wild in GB, and the biosecurity measures that can be taken by herpetologists with captive collections to mitigate this threat [E4]. Over the last 12 months, the GWH website received >58,000 user sessions by >48,000 users, who viewed>93,000 pages.

Controlling flow of amphibian infections through amphibian trade:

Cunningham’s membership on the OIE’s Ad Hoc Group for Amphibian Diseases was a direct outcome of the science he produced investigating the infectious disease causes of amphibian declines [E5]. This work led to amphibian chytridiomycosis and ranavirosis and their causative agents being included in the Aquatic Animal Health Code and directly contributed to the addition of B. salamandrivorans to the code in 2018 [E5]. Collaborative work by IoZ researchers involved screening more than 5,000 amphibians across four continents and combined experimental assessment of pathogenicity with phylogenetic methods to estimate the threat that the infection poses to amphibian diversity. This work also provided the scientific evidence that B. salamandrivorans is a recently emerged amphibian pathogen that arrived in Europe via the transport of Asian amphibians in the pet trade [R3], [E5]. This evidence was used to enact international restrictions on the importation of caudate amphibians into the U.S.A. (U.S. Fish and Wildlife Service listing 201 salamander species as potentially injurious wildlife species through carrying B. salamandrivorans) and Canada (adding all salamanders to Schedule II of the Wild Animal and Plant Trade Regulation) and into and between EU member states (European Commission implementation OJ L 062 5.3.2018, page 18) [E5], [E6].

Impacts on the environment and Conservation Action Plans:

IoZ scientists have identified several possible strategies for preventing disease in wild amphibians against both species of fungus that cause chytridiomycosis. Applications of some of these have achieved both short- and long-term reductions and even eliminations of infections, which has directly benefited on-the-ground conservation efforts in the Caribbean and Europe [R9]. More than 2,000 Mallorcan midwife tadpoles were collected from the two drainage basins affected by chytridiomycosis and treated for infections, and the same was done for 220 frogs on Montserrat. Treatment on Mallorca likely saved one region from species extirpation, and lessons learned on Mallorca are being applied more broadly in the Iberian peninsula [E7]. On Montserrat, treatment of dozens of adult frogs provided short-term benefits and further research is now guiding the design of habitat refuges to prevent severe manifestations of disease [E7]. IoZ researchers helped establish captive management and disease diagnostic facilities on Dominica that continue to inform amphibian conservation activities on the island and helped establish a new NGO responding to the additional impacts of habitat loss attributable to Hurricane Maria [E8]. In addition, research, position statements on mitigating disease and field trials have all contributed to national and global action plans for the conservation of species at risk of extinction through to setting priorities for the global conservation of amphibians. As examples, IoZ research has helped develop the conservation actions plans for the Mountain Chicken Frog on Dominica and for Darwin’s frogs (two species) in Chile, and setting priorities of the Infectious Diseases Thematic Working Group of the IUCN’s Amphibian Conservation Action Plan [E9].

5. Sources to corroborate the impact

[E1] Fisher MC et. al. (2018). ‘Development and worldwide use of non-lethal, and minimal population level impact, protocols for the isolation of amphibian chytrid fungi.’ Scientific Reports, 8, 7772; Leung WTM et. al. (2017). ‘A quantitative-PCR based method to estimate ranavirus viral load following normalisation by reference to an ultraconserved vertebrate target’. Journal of Virological Methods, 249, 147-155.

[E2] Training testimonials: Brazil, Dr. Joice Ruggeri, post-doctoral researcher; Chile, Dr Andrés Valenzuela-Sánchez; Chile2, Dr Claudio Azat Soto; Czech Republic, Dr. Vojtech Baláž, Assistant Professor; Finland, Dr. Bibiana Rojas, Research Fellow; Hungary, Dr. Judit Vörös, museum curator; Sweden, Professor Jacob Höglund; Switzerland, Dr. Benedikt Schmidt, Research Associate; UK, Dr. Xavier Harrison, Lecturer; USA, Dr. Lewis Campbell, post-doctoral researcher; USA2, Dr. David Daversa, Research Fellow

[E3] Workshop testimonial, Dr. A. Spitzen – van der Sluijs and Dr. S. Canessa, workshop facilitators

[E4] APHA animal disease surveillance reports https://www.gov.uk/government/collections/animal-disease-surveillance-reports#wildlife; https://www.arguk.org/info-advice/advice-notes/324-advice-note-4-amphibian-disease-precautions-a-guide-for-uk-fieldworkers-pdf-2/file

ARC Trust Conservation Director testimonial

[E5] OIE testimonial; Defra testimonial on Bsal in UK amphibian trade, Defra; Federal Register / Vol. 81, No. 8 / Wednesday, January 13, 2016

[E6] Commission Implementing Decision (EU) 2018/320 of 28 February 2018 on certain animal health protection measures for intra-Union trade in salamanders and the introduction into the Union of such animals in relation to the fungus Batrachochytrium salamandrivorans (notified under document C(2018) 1208); Environment and Climate Change Canada (ECCC)’s Import Restrictions on Salamanders Customs Notice 17-17

[E7] CSIC Mallorca mitigation testimonial

[E8] Montserrat mitigation testimonial; Dominica conservation testimonial, Director of Forestry, Wildlife and Parks; Dominica NGO testimonial, WildDominique

[E9] IUCN mountain chicken frog conservation plan and Darwin frog conservation plan https://www.iucn-amphibians.org/wp-content/uploads/2018/11/Mountain-Chicken-SAP-2014-working-draft-FINAL.pdf; https://b73b2e05-1b4f-4faa-90f2-5d3a34ec037d.filesusr.com/ugd/5a50fd_2ab9b0ad362d4a758e911fa9b4633c60.pdf

Submitting institution
Birkbeck College, Institute of Zoology, University College London (joint submission)
Unit of assessment
5 - Biological Sciences
Summary impact type
Environmental
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

The continuing rapid loss of biodiversity and the associated transformation of natural ecosystems is of major societal concern but as long as the economic value of nature is unknown or uncounted biodiversity is excluded from many decision-making processes and treated as if its loss does not incur immediate costs and risks. Research co-led by Professor Georgina Mace has helped develop an approach for valuing ecosystem services and accounting for natural capital. This research has shaped key components of the government’s ‘25 Year Environment Plan’ (2018) and the 2020 Environment Bill, which will help ensure the long-term security of biodiversity and natural assets.

2. Underpinning research

Landscapes generate a wide range of valuable ecosystem services, without which economic and social development would not be possible, yet land-use decisions often ignore the value of these services. This body of research, co-led by Mace in collaboration with economists, developed novel approaches to incorporate natural capital (stocks of renewable resources, such as plants and animals) and valuation of ecosystem services into decision-making. Furthermore, the research demonstrated that failure to incorporate economic valuation of natural capital would lead to short-term growth and social injustice.

Putting the ecosystem services approach into practice in the UK (from 2012 to2013)

This research investigated the social value (in monetary terms) of taking a broader set of ecosystem services into consideration when making large-scale, land-use decisions in the UK. The analysis demonstrated that the social value of ecosystem services that are not traded in markets (such as recreation, carbon storage and soil fertility) greatly exceed the market value of agriculture and timber, which usually underpin land use decisions. It thereby highlighted an important gap in existing policy for land use. The research also took a new approach to biodiversity valuing in ecosystem assessment that recognised its multiple roles in the ecosystem services framework. Recognising that biodiversity conservation outcomes were not monetizable, the analysis modelled the maintenance of species diversity and of high priority habitats as a constraint in the land use optimisation procedure. Using such an ecosystem services framework showed that, in contrast to perceptions that conservation measures are an additional cost, the opportunity costs of conservation are small or trivial while overall benefits to society increase many hundreds of times over [R1].

Developing an approach to natural capital assessment and valuation (from 2013 to 2015)

This research developed and deployed an ecosystem-science based approach to link ecosystem services to natural capital. In [R2], Mace led the work to propose a classification of natural assets and a desk-based review to investigate the ecosystem service benefits that were degrading, or at risk of loss, in the UK. It led to specific recommendations to the UK Government that identified the ecosystem service benefits at highest risk (e.g. clean water, wildlife conservation, climate regulation) and identified ecosystem restoration projects that could secure them for the future (e.g. restoring and conserving woodlands, maintaining wetlands and coastal marshes, restoring peatland) [R2].

Embedding the value of biodiversity in economic analysis

This research is a review of the ecological and biodiversity science in a book written for economists that outlines the approach taken. It introduces the distinction between ecological stocks and flows of ecosystem services in a paper geared to economics interests [R3]. A review of the book by an economist states this is *‘an excellently crafted exposition of the meaning, roles and status of biodiversity, chapter three is a must read.*’

3. References to the research

[R1] Bateman, I.J., Harwood, A.R., Mace, G.M., Watson, R.T., Abson, D.J., Andrews, B. et al. (2013). ‘Bringing Ecosystem Services into Economic Decision-Making: Land Use in the United Kingdom’. Science, 341, 45-50. DOI: http://doi.org/ 10.1126/science.1234379 (cited by >700 [Google Scholar])

[R2]. Mace, G.M., Hails, R.S., Cryle, P., Harlow, J. & Clarke, S.J. (2015). ‘Towards a risk register for natural capital.’ Journal of Applied Ecology, 52, (3) 641-653. DOI: http://doi.org/ 10.1111/1365-2664.12431. (This paper describes an approach to risk assessment for natural capital and shows how it can be implemented using available data from England. The online supporting information includes the results of the desk-based review. (cited by >90 [Google Scholar])

[R3]. Mace, G.M. (2014). ‘Biodiversity: its meanings, roles and status’. In: Nature in the Balance: the economics of biodiversity, chapter 3 (eds. Helm, D & Hepburn, C). Oxford University Press Oxford. DOI: https://doi.org/10.1093/acprof:oso/9780199676880.003.0003. (cited by 17,Google Scholar)

4. Details of the impact

Between 2012 and 2018 Mace, as an influential member of the UK Government’s Natural Capital Committee, has worked closely with colleagues on the committee to provide independent advice to the government on the sustainable use of natural capital. Most of the work described in this case study was done in collaboration with Professor Ian Bateman, an environmental economist at the University of Exeter and member of the Natural Capital Committee, as well as the economists Julian Harlow (Department for Environment, Food and Rural Affairs - Defra) and Russell Elliot (Natural Resources Wales). Mace led the ecological aspects of the work.

Developing and applying a comprehensive approach to the valuation of UK ecosystem services

Market-based decisions inevitably favour monetizable and tradeable services such as food and fuel, but the social value of non-market services such as carbon storage, recreation or urban green space is hundreds of times greater than than the value of marketed food and other produce. The first part of the work, as presented in [R1], was influential in stimulating activities such as:

  1. the funding of a ‘Valuing Nature Network’ (VNN, a five-year, GBP6.5m programme with over 2,000 members) by NERC to grow research capability. As part of the Natural Capital Coalition (NCC) management team, Mace utilised [R1] as a framework to ensure a direct flow of evidence from the VNN to government, resulting in policy changes (e.g. the UK Peatland Code) via the project’s policy briefings and engagement network. [E1]

  2. the Defra ‘Ecosystem Markets Task Force,’ which reported to Defra, DECC (Department of Energy and Climate Change) and BEIS (Department for Business, Energy and Industrial Strategy) and advised on opportunities for UK business from expanding green goods, services, products, investment vehicles and markets which value and protect ecosystem services. Working with Mace, Bateman briefed the Ecosystem Markets Task force in its early days on the UK National Ecosystem Assessment and its implications for business opportunities [E2].

  3. the cross-sector NCC that was founded in the UK and is now developing globally. The NCC has become the global leader in mainstreaming natural capital approaches in the private sector, with over 370 leading orgnizations engaged. [R1] was cited directly in both the NCC’s biodiversity protocol and the UK Ecosystem Assessment [E3].

Development of natural capital approaches and their implementation in policy.

Natural capital is recognised by economists as one of the four major types of capital that underpin human welfare (along with human capital, financial capital and produced capital). Ecosystem services are the flows of benefits to society that are delivered by well-maintained natural capital assets. In [R2], Mace and her colleagues proposed a framework for the classification of natural assets and investigated the ecosystem service benefits that were degrading or at risk in the UK (the natural capital ‘risk register’), and [R3] was influential in translating ecological concepts for application by economists. This work led to specific recommendations to the government by the Natural Capital Committee, concerning the ecosystem service benefits at highest risk (e.g., clean water, wildlife conservation, climate regulation) and the ecosystem restoration projects that could secure them for the future (e.g. restoring and conserving woodlands, maintaining wetlands and coastal marshes, restoring peatland) [E4].

Advising on the UK Government’s 25 year Environment Plan and the 2020 Environment Act

In 2017, a new Defra Secretary of State (Michael Gove) revitalised the research to meet the 2012 policy commitment ‘to be the first generation to leave the natural environment in a better state than it inherited’. The Natural Capital Committee recommended that this generation-scale commitment needed a long-term plan. The work described in [R1], [R2] and [R3] directly informed work in Defra to develop a 25 Year Environment Plan for England. This plan, launched by the Prime Minister in January 2018, highlighted six target outcomes for society which directly trace back to the risk register work [R2], as well as work contributed by Mace and colleagues to the Natural Capital Committee’s third report [E5]. Julian Barlow, deputy head of land-use policy at DEFRA, has commented that “At the heart of this 25 YEP [Year Environment Plan] is the natural capital conceptual framework and metrics developed by Professor Mace.” [E6]

A significant consequence of the UK’s decision to leave the EU was the need to establish a system to replace the Common Agricultural Policy (CAP), to support food production but also to secure the wider benefits from the natural environment. Two new Government bills were developed in Defra: the Agriculture Bill and the Environment Bill.

The Agriculture Act (2020) adopts a novel objective that public money should support public goods, emphasising that land owners need to be incentivised to secure the non-market goods of high public value that were highlighted in [R1], rather than private goods of limited public value.

The Environment Bill deals more centrally with environmental outcomes identified in the 25 Year Environment Plan. Legislation is pending (the bill has reached the Report Stage and was debated by MPs on 26 January 2021), but its framing and draft indicator set published by Defra in May 2019 is founded on the NCC framework (described in section 2) and the targets and indicators identified in [R2]. Defra’s Julian Barlow has written that “ The Government is currently in the process of legislating for future Environmental Improvement Plans and a suit of environmental targets, all of which flow directly from the NCC’s [Natural Capital Committee’s] work – specifically the contributions of Prof Mace which wholly underpins the approach.” [E6]

5. Sources to corroborate the impact

[E1] UKRI VNN report, https://nerc.ukri.org/research/funded/programmes/valuation/vnn-final-report/

[E2] Ecosystem Markets Task force report

[E3] UK National Ecosystem Work Package 3 Final Report. July 2014. [PDF]

[E4] Natural Capital Committee End of Term Report. November 2020. https://www.gov.uk/government/publications/natural-capital-committees-end-of-term-report

[E5] Nature Capital Committee’s third report, https://www.gov.uk/government/publications/natural-capital-committees-third-state-of-natural-capital-report

[E6] Statement from the Head of local environmental delivery and local nature recovery strategies, Defra. [PDF]

Submitting institution
Birkbeck College, Institute of Zoology, University College London (joint submission)
Unit of assessment
5 - Biological Sciences
Summary impact type
Environmental
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

Although a widely used conservation management action for >1,300 species worldwide, conservation translocations (moving endangered species from one site to another for conservation) have a poor success record. To address this, researchers at the Institute of Zoology (IoZ) developed a programme of work to identify best practice methods for the management of conservation translocation programmes. These methods were implemented via review of International Union for Conservation of Nature (IUCN) conservation translocation guidelines, development of IUCN conservation translocation practitioner training and through policy and management initiatives adopted by conservation NGOs and governments globally. As a result, there have been demonstrable improvements for focal species (critically important endangered species) across the world, including IoZ playing a critical role in leading the recovery of four bird species: New Zealand’s hihi (adding >200 to a global population of 1000-3000), Australian Regent honeyeaters, Mauritius parakeets and olive white-eyes.

2. Underpinning research

Conservation translocations (defined as ‘deliberate movement of organisms from one site for release in another intended to yield a measurable conservation benefit’ by the IUCN in 2013) are an increasingly necessary conservation tool. However, despite a few well-publicised success stories, most conservation translocations fail. If global biodiversity recovery is to be achieved, improving conservation translocation success is imperative.

IoZ research undertaken by Taylor (Ewen’s NERC/DTP Student between 2014 and 2018) found that, despite 20 years of the applied science of reintroduction biology, the discipline has largely failed to support conservation translocations because of a mismatch between species management needs and scientific interests [R1], leading to the production of interesting, yet not always useful, science. In response to this, IoZ developed a research programme aimed at delivering evidence-based solutions to management issues identified by practitioners and associated with animal translocations. This approach ensured that IoZ research met end users’ expectations, including governments and NGOs, and directly informed management decisions. Some specific examples from IoZ research include:

New Zealand (NZ) hihi translocations

The hihi is an endangered NZ forest bird which had become restricted to a single offshore island; since 1980 an ongoing recovery program has aimed to increase its range and numbers, through reintroduction. Often conservation translocations involve supporting the animals after their release, for example supplementary feeding – but this is often carried out without critical evaluation of how much benefit these measures provide. IoZ researchers provided this critical evaluation. They used monitoring data from 1991 to 2010 to quantify population demographic benefits of supplementary feeding and projected these into the future under different feeding regimes (research carried out by Chauvenet, Ewen’s AXA-funded PhD Student between 2009 and 2012) [R2]. Furthermore, using population monitoring data from 1995 to 2015, Ewen et al. built a model to evaluate three management alternatives, including no further translocation and translocations of 15 additional females (from the only possible source population) in either 2015 or 2016. The fundamental objectives were to maximize the number and persistence of female hihi in the new location, minimize the impact on the source population, and minimize costs. Their analysis, carried out between 2016 and 2018, showed that no further translocation was the rational choice for an establishing population [R3].

Mauritius (Echo) parakeet disease management

An outbreak of beak and feather disease virus in Mauritius parakeets in 2005 has led to major changes in how this reinforced wild population has been managed ever since. Using an experimental approach spanning three breeding seasons (2013 to 2014 and 2015 to 2016) IoZ researchers quantified the efficacy of chemical hygiene protocols of nest sites that had been in place since the outbreak (work led by Fogell, Ewen’s NERC/DTP Student between 2015 and 2019). IoZ researchers showed that while management reduced prevalence of beak and feather disease virus it also unintentionally reduced breeding success (the fundamental objective for management), leading to an evidence-based change in nest site management [R4].

Mauritius olive white-eye supplementary feeding

Post-release population growth of the critically endangered Mauritius olive white-eye had been aided by supplementary feeding. However, the success of feeding resulted in demand for food that overtook management capacity. In turn, managers feared that changing to a less intense feeding regime would cause population declines. IoZ research combined a field experiment (undertaken between 2013 and 2015) with decision support analysis to quantify the risks and assist in rational decision making, resulting in an evidence-based change to a less intensive, less costly feeding regime that did not cause population declines. In 2020, four years after the experiment, the population was continuing to grow and costs had been contained, matching predictions almost exactly [R5] (selected Feature Paper for the upcoming issue of the journal).

Australian Regent honeyeater nest predator management

Regent honeyeaters are critically endangered, with an estimated population of less than 400 mature birds. An ongoing reinforcement program is in place using captive reared birds. IoZ research found that the reproductive success of released birds was very low due to predation. As part of the research, IoZ researchers led a decision process for identifying and selecting a perceived best way to manage predator pressure (undertaken by Taylor, Ewen’s NERC/DTP Student between 2014 and 2018) [R6]. This research showed how risk aversion (stemming from the wish not to worsen an already perilous species status) and uncertainty makes decisions difficult, but structured thinking helps compare and select management options, subsequently adopted by the recovery group.

3. References to the research

IoZ staff and student contributions in bold. Altmetrics provided given recentness of most publications listed. Citations given for outputs pre-2019.

[R1] Taylor, G., Canessa, S., Clarke, R.H., Ingwersen, D., Armstrong, D.P., Seddon, P.J. & Ewen, J.G. (2017). ‘Is reintroduction biology and effective applied science? Trends in Ecology and Evolution’ 32, 873-880. DOI: https://doi.org/10.1016/j.tree.2017.08.002 (This systematic review includes primary data analysis based on data extracted from reviewed articles. Citation number: 56, Percentile relative to 15,000,000 output across all sources: 93rd percentile)

[R2] Chauvenet, A.L.M., Ewen, J.G., Armstrong, D.P., Coulson, T., Blackburn, T.M., Adams, L., Walker, L.K. & Pettorelli, N. (2012). ‘Does supplemental feeding affect the viability of translocated populations? The example of the hihi’. Animal Conservation. 15, 337-350. DOI: https://doi.org/10.1111/j.1469-1795.2012.00522.x (Citation number: 42, Percentile relative to 12,420,000 outputs across all sources: 73rd percentile)

[R3] Panfylova, J., Ewen, J.G. & Armstrong, D.P. (2019). ‘Making structured decisions for reintroduced populations’. Conservation Science and Practice. 1 (10). DOI: http://doi.org/10.1111/csp2.90 (Percentile relative to 15,807,000 outputs across all sources: 48th percentile)

[R4] Fogell, D.J., Groombridge, J.J., Tollington, S., Canessa, S., Henshaw, S., Zuel, N., Jones, C.G., Greenwood, A. & Ewen, J.G. (2019). ‘Hygiene and biosecurity protocols reduce infection prevalence but do not improve fledging success in an endangered parrot.’ Scientific Reports 9,4779. DOI: https://doi.org/10.1038/s41598-019-41323-w (Percentile relative to 15,791,000 outputs across all sources: 96th percentile)

[R5] Ferrière, C., Zuël, N., Ewen, J.G., Jones, C.G., Tatayah, V. & Canessa, S. (2020). ‘Assessing the risks of changing ongoing management of endangered species’. Animal Conservation. DOI: https://doi.org/10.1111/acv.12602 (Percentile relative to 16,363,000 outputs across all sources: 94th percentile)

[R6] Canessa, S., Taylor, G., Clarke, R.H., Ingwersen, D., Vandersteen, J. & Ewen, J.G. (2019). ‘Risk aversion and uncertainty create a conundrum for planning recovery of a critically endangered species’. Conservation Science and Practice. 2 (2), e138. DOI: https://doi.org/10.1111/csp2.138%20 (Percentile relative to 15,432,000 outputs across all sources: 92nd percentile)

4. Details of the impact

IoZ works to promote best practice conservation translocations, with impact falling into three main areas: the recovery of endangered focal species (animal species that provide an essential ecological function); capacity building through IUCN training; and influencing the adoption of IUCN guidelines into policy.

Focal species recovery

IoZ research has led to population recovery of multiple endangered species globally:

Hihi (stitchbird): IOZ played a critical role in the recovery of NZ’s endemic hihi alongside collaborators at Massey University. Hihi had become restricted to a single small offshore island for more than a century before early success in reintroduction to Kapiti Island in 1991 [R2]. Based on the findings that population vital rates can be improved via supplementary feeding [R2] all reintroduction sites are fed but closely monitored to refine feeding management decisions [S1]. IoZ research set methods for assessing monitoring data for making decisions on releasing birds [R3)]. These approaches were used to establish three new populations between August 2013 and December 2020, growing the number of populations to seven and spreading hihi into two new mainland regions within their historic range after an absence of more than a century. IoZ research has been used to define national management protocols requested by the NZ government [S1]. Ewen et al.’s methods of modelling projections of both source and destination populations [R3] have been used to give permission for or against translocation [S2], as evidenced by communication from NZ Department of Conservation’s Director General: “ *We are so impressed with the work you do and the increasing recovery of these remarkable birds.*” [S3]. Alienor Chauvenet, the IoZ PhD student who carried out the research [R2] was awarded a RSPB Conservation Science Award 2014 for outstanding PhD thesis in conservation science, with the RSPB judges commenting: “Alienor’s thesis was chosen because it has already had a tangible impact on the conservation of a threatened species, and will contribute to the conservation of many others in future.” [S3].

Mauritius parakeet: Once the world’s rarest parrot, with 8 to 12 individuals in 1987, the Mauritius parakeet now numbers about 400-450 mature individuals. The work of IoZ researchers, alongside collaborators at the University of Kent, showing that chemical treatment of nest boxes reduced breeding success [R4], resulted in the Mauritius Wildlife Foundation (MWF, an in-country NGO) discontinuing chemical treatment of nest boxes in 2017, a process that had been in place for over a decade. This improved parakeet breeding success by 5% [R4], as well as removing a resource intensive component of population management [S4]. Similarly, IoZ work done with MWF predicting cheaper management with equal population growth in the critically endangered Mauritius olive white-eye (the rarest bird species in Mauritius; 191 to 327 mature individuals) [R5] resulted in the MWF reducing management effort involving supplementary feeding in 2015. MWF’s Conservation Director stated that “ this research gave us the evidence needed to change from twice daily feeding with expensive imported nutritional supplements to single daily feeds with a much cheaper and locally produced food, cutting our costs by more than half” [S4]. In both cases there has been a substantial ease in the workload and no compromise on the recovery of either species.

Regent honeyeater: In Australia, IoZ and Monash University research on the critically endangered Regent honeyeater (350 to 400 mature individuals remaining) quantified the predicted outcome of alternative nest protection actions [R6]. This research was used by the species recovery team to select and apply new nest protection measures using tree collars in 2019. Birdlife Australia’s National Regent Honeyeater Recovery Coordinator stated: “ Gemma and the IoZ team helped us work through a complicated choice to find the best balance for action and risk for us”) [S5].

Capacity building through IUCN training

Capacity building can allow faster uptake of best practice. In 2016, the Chair of the IUCN Conservation Translocation Specialist Group (CTSG) engaged IoZ to lead on developing an IUCN CTSG practitioner training course [S6], which features worked examples including [R1], [R2], [R3], [R4], [R6]. This four-day course has been running annually since 2016 and has trained 110 practitioners from 27 countries to date (including 26 practitioners from developing countries). Feedback from the course has been excellent, for example, one participant from Natural England said: “I really enjoyed the course and sat through most of it thinking my job would be so much easier if people applied the methods discussed at least to some extent.” Another from The Nature Conservancy stated: “I am so grateful to have had the opportunity to participate in that training. It was one of the best investments of time in that kind of thing I’ve made in memory. It was really, really good.” [S6].

Ongoing contact with course alumni has also demonstrated the enduring impact of the training. For example, in release planning of the extinct-in-the-wild Guam kingfisher (sihek). The Coordinator of Bird Programmes at Guam’s Department of Agriculture notes that “ *It is amazing to say that sihek releases will take place within the next one to two years. Had I not attended the training in 2016, there is no doubt this project would still be stuck.*” (Course alumni Hawaii 2016; [S7]). Also, for the recovery planning of NZ’s rarest breeding bird, the tara-iti, a technical advisor from NZ’s Department of Conservation states: “ We are now able to move forward with a robust recovery strategy for tara iti, due to Dr Ewen’s work, the approach promoted by the IUCN training course and work showcased from the group at the Institute of Zoology” (course alumni Chicago 2018; [S8]). Both projects follow methodologies taught in the course materials including direct comparison of alternatives as stated in [R1] and decision support methods as detailed in [R3] and [R6].

Influencing the adoption of IUCN guidelines into policy

Success stories from IoZ research in [R2], [R3], [R4] and [R5] attracted wider sector interest from NGOs and policymakers via their exposure in IUCN training. This led Ewen to be invited to the British and Irish Association of Zoos and Aquariums (BIAZA) Reintroduction Advisory Group, where he drafted the BIAZA Policy on Conservation Translocations. This policy was signed off by the BIAZA council in March 2019, providing best practice of translocation to all BIAZA zoos and aquariums in Britain and Ireland [S9]. In addition, Ewen was invited as a sounding board member for Natural England’s ‘Code and Good Practice Guidance for Reintroductions and Conservation Translocations’ , where the Principal Specialist for Species Protection at Natural England noted: “ his key recommendation has been to encourage conservation translocation decisions based on an iterative approach judging alternatives against clearly defined objectives” as outlined in [R1] [S10] .

5. Sources to corroborate the impact

[S1] Ewen, J.G., Armstrong, D.P., McInnes, K., Parker, K.A., Richardson, K.M., Walker, L.K., Makan, T.D. & McCready, M. (2018). ‘Hihi best practice guide’. Department of Conservation, Wellington, New Zealand. Download here: www.hihiconservation.com/wp-content/uploads/2019/03/Hihi-Best-Practice-Guide-July-2018-small.pdf

[S2] Hihi Recovery Group Meeting minutes showing management decision justification

[S3] Email from Director-General Department of Conservation; New Zealand

RSPB conservation science award: https://www.rspb.org.uk/our\-work/conservation/centre\-for\-conservation\-science/conservation\-science\-awards/2014/

[S4] Letter from Conservation Director, Mauritius Wildlife Foundation, Mauritius

[S5] Email from Birdlife Australia

[S6] Letter from Chair IUCN SSC Conservation Translocation Specialist Group.

[S7] Email from Coordinator of Bird Programs, Guam Division of Aquatic and Wildlife Resources, Department of Agriculture, Guam.

[S8] Email from Department of Conservation, New Zealand about Tara-iti planning.

[S9] BIAZA email and Conservation Translocation Policy

[S10] Email from Natural England

Submitting institution
Birkbeck College, Institute of Zoology, University College London (joint submission)
Unit of assessment
5 - Biological Sciences
Summary impact type
Cultural
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

Organic-based heritage objects form an important part of our histories and their preservation is vital. A research team at UCL/Birkbeck has changed conservation best practice by developing tools to evaluate levels of air corrosivity and testing methods to detect early signs of damage. Dosimeters and minimally invasive, sensitive methods are now used in museums throughout the world to protect priceless artifacts. English Heritage is currently reviewing conditions in 1000 showcases and frames as a result. The team’s research has also led to implementation of new conservation treatments in museums and private collections in UK, Europe, and the US, for painting canvases and collagen-based heritage materials, and in South America (Brazil) for earthen architecture.

2. Underpinning research

Priceless and irreplaceable objects of cultural and historical interest need to be protected from degradation and conserved in a sustainable way. Researchers from UCL/Birkbeck have, over the last 20 years (a) developed devices to monitor levels of air corrosivity in museums (b) analysed the effects of pollutants on heritage objects to inform protocols for assessment of resulting damage to organic-based heritage materials and (c) evaluated effect of novel and sustainable nano-based materials used for conservation treatment.

The UCL/Birkbeck team was the first to demonstrate that volatile organic compounds (VOCs) can cause damage not only to inorganic objects but also to organic-based heritage objects ( R1). Such pollutants became an increasing concern when investigators found that some materials commonly used in the construction of micro-climate frames and modern showcases allowed build-up of volatile organic acids at levels which caused damage to objects stored in these locations.

To monitor air quality surrounding works of art in museums, palaces, historic houses and display cases, the team used lead-coated piezo-electric quartz crystals (L-PQC) to measure levels of corrosivity in indoor air in these locations As part of the EU 7th Framework funded MEMORI project (Measurement, Effect, Assessment and Mitigation of Pollutant Impact on Movable Cultural Assets Innovative research for market transfer), the team went on to study the effect of VOCs on a range of materials, including natural and synthetic varnishes on paintings and collagen-containing materials (parchment, leather), and determined threshold levels of volatile organic acids that would cause damage to these materials. ( R2).

The dosimeter measures changes in crystal oscillation frequency as the surface coating’s (lead) mass changes as it corrodes due to exposure to volatile organic acids. This response has been calibrated in the laboratory and at sites where levels of volatile organic acids have also been assessed using independent measurements from diffusive passive samplers. Furthermore, as a result of the MEMORI project these measurements can now be used to predict the extent of the damage that would be caused by these materials.

The measured signal is then interpreted in terms of a traffic light system which can inform the conservator as to whether the microclimate is acceptable for a class of materials or whether it needs attention. Coupled to appropriate electronics these dosimeters are capable of remote real-time monitoring and provide a readout for the level of risk posed to objects in that environment (R1, R2). The range of metal coatings on the dosimeters has now been expanded to detect a wider range of pollutants and these have been evaluated and the electronics improved making the system suitable for a wider range of circumstances ( R2).

The team went on to develop a macro to nano-scaled approach for damage assessment of collagen-based materials using mechanical testing with programmed RH and Atomic Force Microscopy (AFM). AFM images were collected from large numbers of samples both artificially aged (by inorganic and organic pollutants, temperature, and relative humidity [RH]) and historical parchment/leather samples from diverse European archives. A damage classification scale based on mechanical response to RH and corresponding AFM images was developed (R3).

This damage classification system was then used to evaluate effects of novel nano-based conservation treatments including calcium carbonate and calcium hydroxide nanoparticle preparations. Alkaline-based calcium hydroxide nanoparticles were used for paper/canvas deacidification and consolidation. The evaluation assisted in further promoting the tools’ commercialisation. Additional calcium-containing nanoparticiles were used for pH adjustment of collagen containing materials such as historical damaged parchment and historical vegetable-tanned leather. The team demonstrated that the treatment had a protective effect particularly on the latter (R4).

The team also applied the mechanical testing protocol with programmed RH cycling to assess the performance of newly developed nanocellulose-based consolidants for canvas, e.g. nanofibrillated nanocellulose (CNF) (R5, R6). These were tested alongside commonly-used adhesives (natural animal glue and synthetic Beva ® 371).

3. References to the research

[ 1] Odlyha M, Slater JM, Grøntoft T, Jakiela S, Obarzanowski M, Thickett D, Hackney S, Andrade G, Wadum J, Christensen AH & Scharff M. (2018). A Portable Tool for the Evaluation of Microclimate Conditions within Museum Enclosures, Transit Frames, and Transport Cases, Studies in Conservation, 63:sup1:407-410, DOI: 10.1080/00393630.2018.1499841

[2] Agbota H, Mitchell JE, Odlyha M, Strilič M. (2014). Remote Assessment of Cultural Heritage Environment with Wireless Sensor Array Networks. Sensors 14:8779-8793. https://doi.org/10.3390/s140508779

[3] Odlyha, M., L. Bozec, A. Bartoletti, L.N. Melita,R. Larsen, K. Mühlen Axelsson, E. Dahlin, T.Grøntoft, P. Baglioni, R. Giorgi, D. Chelazzi, and R. Bergerat. (2014). Damage assessment of parchment at the collagen fibril level using atomic force microscopy and mechanical testing at the macro level. In ICOM-CC 17th Triennial Conference Preprints, Melbourne, 15–19 September 2014, ed. J. Bridgland, art. 0607, 7 pp. [Paris: International Council of Museums. (ISBN 978-92-9012-410-8)

[4] Baglioni,M., Bartoletti,A, Bozec,L.Chelazzi, D., Giorgi,R., Odlyha,M., Pianorsi ,D., Poggi,G.,Baglioni,P. (2016). Nanomaterials for the cleaning and pH adjustment of vegetable-tanned leather. Applied Physics A doi:10.1007/s00339-015-9553-x

[5] Bridarolli,A. Odlyha,M., Nechyporchuk,O.,(2018). Evaluation of the Adhesion and Performance of Natural Consolidants fo Cotton Canvas Conservation ACS Applied Materials and Interfaces, 10, 39 33652-33661 doi.org/10.1021/acsami.8b10727

[6] Alexandra Bridarolli, Anna Nualart-Torroja, Aurélia Chevalier, Marianne Odlyha and Laurent Bozec (†Marianne Odlyha and Laurent Bozec senior authors)  (2020). Systematic mechanical assessment of consolidants for canvas reinforcement under controlled environment Herit Sci 8:52 https://doi.org/10.1186/s40494-020-00396-x

4. Details of the impact

Research from UCL/Birkbeck has transformed the way museums, archives and cultural heritage sites conserve their collections by raising awareness of the dangers of volatile organic pollutants and providing simple and economic ways to protect collections. They have also promoted and demonstrated the effectiveness of sustainable materials for conservation treatments. Through wide-ranging collaborations, workshops and international presentations, the methods and tools devised at UCL/Birkbeck are now embedded in best practice guidelines and applied to collections around the world, from national museums to small private collections. Since 2013, more than 120 conservators at cultural heritage sites and in museums in at least 14 countries have used these new conservation methods, better protecting thousands of priceless objects.

Implementation of L-PQC to detect volatile organic pollutants in museums across Europe

Traditionally, the presence of VOCs, such as acetic and formic acids have been detected in museums using lead coupons (shiny lead strips of known mass) or expensive passive diffusive samplers. The L-PQC dosimeters developed at UCL/Birkbeck provide conservators with an effective and inexpensive alternative. The metal-coated piezoelectric quartz crystals (PQC) detect and evaluate levels of corrosivity more quickly, more accurately and also remotely. Thousands of artifacts are now being protected following evaluations using L-PQC in the UK and Europe ( S1). The head conservator at Spain’s SIT Madrid said: ‘ Since August 2013 until 2020, … L-PQC (lead coated piezoelectric quartz) …were used to test air quality in showcases and microclimate frames in public museums and private art collections in Spain.… As part of our projects for 2020, we are offering the air quality measure service to private art collectors in EU’ ( S2).

Remote monitoring using PQC arrays with additional metal coatings (Fe,Cu,Ni and Sn) for detection of corrosivity from inorganic pollutant gases O3, NO2 and SO2, have been used within the Royal Palaces of Abomey in Benin (UNESCO World Heritage site) and Apsley House (English Heritage) and differences due to geographical location recorded ( S1).

Best practice guidance and decision support model for preservation of organic-based heritage objects worldwide

The UCL/Birkbeck team’s research and unique database including a combination of model samples subjected to accelerated ageing and a range of historical samples, has directly informed a decision support model published by English heritage ( S3, S4).

Objects and samples from collections from around the world are tested periodically. The decision support model acts as an early warning system (based on traffic lights code) where red alerts conservators to the need for intervention.

It provides guidelines for optimal display and storage conditions to preserve organic-based heritage objects. The guidelines are used by more than 120 heritage institutions worldwide to ensure best practice in conservation and preservation. The Senior Conservation Scientist at English Heritage said: “ *Dr Odlyha’s work has been of immense benefit to managing the national collection of over 1 million objects in English Heritage’s care. …The research was critical to the MEMORI decision support model.*“

The decision support model has been shared with over 300 professional and student participants in 14 international workshops and is currently used in major international museums in more than 15 major cities from Paris to Uzbekistan ( S1). English Heritage is using the model to check all its 1000 showcases and painting frames. As part of the programme it has to-date, refurbished over 90 showcases and 32 painting frames across 19 sites, better preserving more than 3000 precious objects as a direct result of its findings ( S1).

Advancing detection of damage to collagen-based materials using Atomic Force Microscopy in the UK

Atomic Force Microscopy (AFM) for application to collagen-based materials can detect damage at the collagen fibril level and also reveals presence of localised gelatinised areas. These areas are prone to cracking and can lead to loss of script. Since 2013, a database of AFM images has been established which has facilitated damage assessment on fibres from documents and from leather book-bindings e.g. Charles Darwin notebooks in English Heritage collections, Down House ( S1). The protocol was used in the MEMORI project to evaluate effect of exposure of parchment and leather to volatile organic acids and the resulting damage categories included in the decision support model which is currently widely used by English Heritage. The possibility of in situ imaging with portable AFM has allowed conservators to assess damage non-invasively on the object, including an historical 18th century parchment manuscript at The National Archives (London, UK), a historic violin, and surfaces of paintings at the Tate during treatment ( S5).

Application of novel nano materials for sustainable conservation of cellulose based artifacts worldwide

In paintings conservation, Dr Odlyha introduced the damage assessment protocol involving mechanical analysis to evaluate effects of alkaline-based nanoparticles applied to cellulose containing materials (paper and painting canvases) to negate acidic conditions which develop as these materials age and eventually lose their strength. These results and evaluations of these products has assisted the Centre for Colloid and Surface Science, Florence (CSGI) in marketing these preparations. The products have now been sold in 18 countries across Asia, Europe and North and South America in sufficient quantities to protect more than 100,000 cellulose containing objects including painting canvases ( S6). In addition, nanocellulose-based products which were introduced to consolidate the canvases in the NANORESTART project were tested using this protocol and further developments were made ( S7). Odlyha has collaborated with Lacerta Technology (UK) to test and develop the approach using programmed RH cycles with mechanical testing together with dielectric analysis ( S8). The positive evaluation of these conservation treatments has led to their use by practising paintings conservators across Europe, including via an ERASMUS programme collaboration between UCL/Birkbeck and the School of Conservation in Copenhagen ; in art conservation studios in Paris (Aurelia Chevalier, working with the Louvre); Centre for Colloid and Surface Science (CSGI), Florence; ZFB, Leipzig, Germany; and the Department of Arts and Conservation, University of Barcelona where paintings conservators are trained ( S9, R8).

Head conservator at the School of Conservation, Denmark said: “Dr.Odlyha has been a prominent researcher with her work forming part of the group of researchers that laid the basis for an entirely new way of understanding the behaviour and deterioration of canvas paintings in art museums….“ Participants at the sector’s leading conference held at Yale University in 2019 to review conservation research hailed Odlyha’s research as “ one of the most prominent and wide-ranging new treatment options announced at the conference”. ( S10) .

Improving conservation of earthen architecture in Brazil

The methods developed at UCL /Birkbeck have also been used to test the effect of using termite mounds in restoration of earthen architecture. Previously, synthetic materials had been used for restoration, but these have different moisture absorption properties to the original materials, affecting stability. The results of tests carried out by UCL/Birkbeck on two large manor houses in Brazil, built using earthen architecture, have led to changes in their practice ( S11).

5. Sources to corroborate the impact

S1 Letter from Senior Conservator English Heritage and additional figures provided by email.

S2 Testimonial letter from SIT Departmento Tecnico (SIT) Madrid Spain.

S3 MEMORI project website http://www.memori.fraunhofer.de/ and final report summary https://cordis.europa.eu/project/id/265132/reporting

S4 David Thickett, Frances David & Naomi Luxford (2005) Air exchange rate ‐ the dominant parameter for preventive conservation?, The Conservator, 29:1, 19-34, DOI: 10.1080/01410096.2005.9995210

S5 Presentation at COST action WoodMusick project in Brussels (Oct 2017): Correlation of Mechanical Behaviour with Advanced Chemical Analysis of Varnished Wood M.Odlyha, A.Lluveras-Tenorio et al

S6 Figures from SCGI on number of Nanorestore product units sold (nanorestore Paper and Nanorestore Plus sold (56,950 units sold 2018-2020). Assumed 1L enough to protect 2 paintings.

S7 NANOFORART project website http://www.nanoforart.eu

S8 Testimonial letter from Lacerta Technology, UK

S9 Odlyha Birkbeck-KADK ERASMUS programme agreement [PDF]

S10 Letter from Royal Danish Academy of Fine Arts of Conservation Consolidation on application of novel nanocellulose-based materials for consolidation of painting canvases.

S11 Testimonial letter from Associate Professor of Analytical Chemistry, University of Sao Paulo, Brazil; Programme for the 17th Conference of the Iberoamerican Network of Earthen Architecture and Construction.

Submitting institution
Birkbeck College, Institute of Zoology, University College London (joint submission)
Unit of assessment
5 - Biological Sciences
Summary impact type
Societal
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

Professor Helen Chatterjee’s research investigates links between arts, cultural and other community assets and the wellbeing of the communities who visit and use them. It has directly improved the emotional and mental wellbeing of those participating in the project - ranging from refugees to those with dementia and mental health issues. Through improving the evidence base, the research has informed the outreach and practice of cultural institutions (such as the Art Gallery of Ontario and Tyne & Wear Archives & Museums). Furthermore Professor Chatterjee’s research has helped policymakers to become better informed as to the connections between culture and wellbeing through the All-Party Parliamentary Group (APPG) on Arts, Health and Wellbeing, and has shaped wider heritage policy, for example through citation in reports by UK Department of Culture, Media and Sport and the World Health Organisation.

2. Underpinning research

Arts and cultural organisations are increasingly aware of the role they can play in supporting the wellbeing of the communities that frequent them—particularly in terms of reducing depression, anxiety and stress amongst visitors. Yet to achieve these aims, cultural organisations need evidence of the most effective ways to improve audience wellbeing. Until recently this has consisted only of studies with very small sample sizes and predominantly anecdotal feedback. Professor Helen Chatterjee’s work, here described across three related projects, seeks to fill this evidence gap.

‘Museums on Prescription’

Chatterjee et al.’s ‘Museums on Prescription’ (between 2014 and 2018, funded by AHRC), was the first project of its kind in the UK to assess the role of social prescribing (community-based referral from a health professional) in museums. The UCL team recruited seven partner museums across London and Kent; the museums ran 12-week and 10-week programmes of museum-based sessions for 115 older adults (65 to 94 years) with approximately 10 participants per group, plus carers. Health and social care practitioners and third sector organisations, for example Age UK, referred participants to museum programmes. Sessions comprised talks, gallery visits, behind-the-scenes tours and collections-inspired creative activities. The research team carried out quantitative evaluation of wellbeing and social inclusion before, during and after the programme using the UCL Museum Wellbeing Measure, a tool developed by Chatterjee and Thomson with 32 specialist museums to better quantify measures of emotional and health responses [R1]. This UCL Museum Wellbeing measure was then utilised in qualitative evaluation of diaries and in-depth interviews. Multivariate analyses showed significant participant improvements in six different emotional registers when comparing participants’ emotions before and after each session, as recorded at the beginning, middle and end of the overall programme’. Two emotions in particular—‘absorbed’ and ‘enlightened’—increased following each session disproportionately to the others, and ‘cheerful’ attained the highest improvement scores [R2].

‘Not So Grim Up North’

The UCL-designed intervention ‘Not So Grim Up North’ (between 2015 and 2018, funded by Arts Council England) was set up with museum partners in Greater Manchester and Tyne and Wear to understand the impacts of cultural and creative programmes for people who had dementia, had survived strokes or who regularly used mental health services. A mixed quantitative and qualitative approach was used to create a video engagement observation tool (co-developed by the researchers), which captured evidence of impact alongside participants and their carers [R3]. Additionally, quantitative and qualitative methods showed how creative participation improved self-esteem and decreased social isolation. Conclusions showed that museums with parks and gardens should consider integrating programmes of outdoor and indoor collections through creative activities that engagement with nature, art and wellbeing [R4].

‘Arts and Forced Displacement’

A further project, ‘Arts and Forced Displacement’ (between 2016 and 2018, funded by the Global Challenges Research Fund (GCRF)) was a collaboration with clients and staff at the Helen Bamber Foundation, London, and Talbiyeh Refugee Camp, Jordan, to explore how arts and heritage programmes could support the psychosocial health of forcibly displaced people. The project used a Participatory Action Research approach and recruited displaced people, professionals from partner institutions and other stakeholders as co-researchers to co-create outcomes, including a public workshop at the Migration Museum in London showcasing arts and crafts produced by participant refugees and asylum seekers. Chatterjee et al interviewed participant refugees before and after they had taken part in the events to measure their wellbeing. Findings showed that artistic and cultural activities helped participants find a voice, create support networks and learn practical skills useful in the labour market [R5].

3. References to the research

[R1] Thomson, L.J. & Chatterjee, H.J. (2015). ‘Measuring the impact of museum activities on wellbeing: Developing the Museum Wellbeing Measures Toolkit’. Journal of Museum Management and Curatorship. 30(1), 44–62. DOI: http://dx.doi.org/10.1080/09647775.2015.1008390

[R2] Thomson, L.J., Lockyer, B., Camic, P.M. & Chatterjee, H.J. (2018). ‘Effects of a museum-based social prescription intervention on quantitative measures of psychological wellbeing in older adults’. Perspectives in Public Health. 138(1), 28–38. DOI: https://doi.org/10.1177/1757913917737563

[R3] Morse, N. & Chatterjee, H.J. (2017). ‘Museums, health and wellbeing research: Co-developing a new observational method for people with dementia in hospital contexts’. Perspectives in Public Health. 138(3), 152–159. DOI: http://dx.doi.org/10.1177/1757913917737588

[R4] Thomson, L.J., Morse, N., Elsden, E. & Chatterjee, H.J. (2020). ‘Art, Nature and Mental Health: Assessing the biopsychosocial effects of a ‘creative green prescription’ museum programme involving horticulture, artmaking and collections’. Perspectives in Public Health. 140 (5), 277-285. DOI: https://doi.org/10.1177/1757913920910443

[R5] Clini, C., Thomson, L. J. & Chatterjee H.J. (2019). ‘Assessing the impact of artistic and cultural activities on the health and wellbeing of forcibly displaced people using participatory action research’. BMJ Open, 9:e025465. DOI: http://dx.doi.org/10.1136/bmjopen-2018-025465

Grants supporting this research:

GBP1,248,268 UKRI (between November 2018 and November 2021) MARCH: Social, Cultural and Community Assets for Mental Health

GBP90,000 Heritage Lottery Fund (between September 2018 and November 2019) Give: Volunteering for Wellbeing.

GBP211,119 Global Challenge Research Fund ESRC/AHRC (between October 2016 and April 2018) Co-developing a method for assessing the psychosocial impact of cultural interventions with displaced people: Towards an integrated care framework

4. Details of the impact

‘Museums on Prescription’ (MoP)

MoP, led by Chatterjee, was not only the first study to assess the role of social prescribing in museums, but also directly benefitted the wellbeing of those adults who participated. Health, social care and third sector partners including Age UK, Camden Carers and Kent County Council identified local socially isolated, vulnerable and lonely older adults and referred them to participate in the programme at seven partner museums across London and Kent (The British Museum; The British Postal Museum and Archive; Canterbury Museums and Galleries: The Beaney; Central Saint Martins Museum and Study Collection; Maidstone Museum & Bentlif Art Gallery; Tunbridge Wells Museums & Art Gallery; and UCL Museums). Older adult participants in the project reported an increased sense of belonging, improved quality of life, renewed interest in learning, increased social activity and continued visits to museum, and there was a statistically significant improvement across all measures of wellbeing and loneliness reduction. Testimonials from participants attest to the programme’s positive impact, with one noting: “It made me feel less lonely. And coming out into places where there are quite a few other people, makes a place like a museum feel more familiar.” Another confirmed how the activity eased their loneliness: “This sort of thing, it helps lonely people, helps with confidence as well and I think that’s the other thing with being lonely or on your own…you haven’t got the confidence to go in on your own.” One participant said that the activity had changed their perspective: “ I’ve learnt so much from it. It’s expanded my thinking, it’s keeping my brain going because it’s given me a different way of looking at things.” [S1].

Not only did the programme benefit older adult participants, but also the project partners. For example, the Head of the Evidence Unit in the Personalised Care Group, NHS England and NHS Improvement said: “Helen [Chatterjee]'s work (such as Museums on Prescription and the Community COVID research) is helping to raise awareness of the benefits of arts-based activities for health and wellbeing, as well as getting a better understanding of what works” [S2]. Through offering novel community-based programmes for their service users, and helping to reach previously untapped audiences, the project has also benefitted referrers. The Assistant Curator, Community Programs at the Art Gallery of Ontario, Canada has said that Chatterjee’s research “provides me with the ability to justify, propose, develop and implement programming which has a fundamental impact on wellbeing” [S3].

A key impact of MoP was a best practice resource ‘Museums on Prescription: A guide to working with older people’, which was co-produced by the whole project team, including several older adult participants. Lessons learned from the development of novel MoP schemes are now changing and influencing other museums’ practices through the creation of this resource. Chatterjee has received scores of requests for further information about the project, over 20 invitations to give talks about the project including keynotes in the UK and overseas, such as the Alberta Museums Association (September 2019), Group for Education in Museums (September 2015) and the International Culture, Health and Wellbeing Conference, Bristol (June 2017).The project has also received the following awards:

  • 2018: National Museums and Heritage Awards: Best Educational Initiative

  • 2017: Royal Society for Public Health (RSPH): Special Commendation from Public Health England for Sustainable Development

  • 2017: RSPH: Arts and Health Award.

‘Not So Grim Up North’

The ‘Not So Grim Up North’ project directly contributed to the wellbeing of people with dementia, mental illness, stroke survivors and those in addiction recovery through creative activities run by The Whitworth, Manchester Museum and Tyne & Wear Archives & Museums. These museums have developed long-term relationships with local healthcare services (e.g. Trafford Hospital) and local third sector charities, and engaged with the project because they were interested in developing a better evidence base around the impact of their work.

After engaging with the programme, participants reported (in a series of interviews carried out by the project team) that their mood had improved, that they were reconnecting with other people, and getting involved in volunteering. One participant in The Whitworth’s GROW Programme, Manchester, said: “I did feel a lot happier, every time I finished the session. I felt a sense of achievement very much so, self-esteem… a sense of belonging as well and doing something that refers to myself and especially with other people. It just made me feel not only more solid within my beliefs in myself and what I can do but a lot more connected, because it was done in a group session as opposed to a one-to-one.” Another felt that the programme created a sense of community through activities with people who shared the experience of mental health difficulties: “It was very important to relate to people, that we had a common ground factor and that was our mental health experiences. Any other art group that wasn’t focused around mental health, I would never be able to have the same chats and the same connection and the same understanding and empathy” [S4].

Museum staff also reported benefits, as described by the Assistant Outreach Officer from Manchester Museums, who said: “Participant X was quite agitated at first (shouting), however, as time went on he completely engaged – talking about the objects and asking about what was happening next week. He told me he was looking forward to seeing me next week!” [S4]. Participating museums also noted how the project had improved their outreach practice. The Head of Outreach at Tyne and Wear Archives and Museums said that “being involved in this research has positively impacted how we design, develop and deliver our outreach services and programmes, which in turn leads to wellbeing improvements for our audiences” [S5].

‘Arts and Forced Displacement’

The GCRF-funded ‘Arts and Forced Displacement’ project showed that creative activities offered opportunities for displaced people to be seen as something other than a refugee or asylum seeker; in addition, participants enjoyed acquiring language skills and gained a chance to explore difficult issues associated with displacement in a safe space outside the clinical setting. One client in the midst of seeking asylum described the “ sense of community” that the project offered: “with that opportunity of people meeting up in the groups where there is a therapeutic activity going on, again it’s a distraction from immigration and we know we are all going through it […]. And learning new things like polishing our existing skills, it’s just amazing.” [S6]. Another participant point out the programme’s ability to create long-lasting social connections: “If you’re in a situation where you’ve been completely isolated from people for a while and you just don’t know who to trust, or to be around people, it’s one of those spaces where you can get to meet people, socialise, and actually make friends. […] And these friendships do last” [R5].*

‘National Alliance for Museums, Health and Wellbeing’

Chatterjee’s research into heritage and wellbeing led her to become Chair and Co-Founder of the National Alliance for Museums, Health and Wellbeing (from 2014 to 2018, funded by Arts Council England), which established a national sector support organisation providing training, conferences and a free online course. In 2018 the Alliance merged to form the Culture, Health and Wellbeing Alliance, which Chatterjee helped to set up. CHWA has over 5,000 members and provides the secretariat to the All-Party Parliamentary Group (APPG) on Arts, Health and Wellbeing, on which Chatterjee advises. The APPG’s Inquiry Report ‘Creative Health: The Arts for Health and Wellbeing’ includes a special section on Chatterjee’s Museums on Prescription project, and Lord Darzi, (Professor of Surgery, Imperial College London) has said that the report “[laid] out a compelling case for our healthcare systems to better utilise the creative arts in supporting health and wellbeing outcomes, building on a growing body of evidence in mental health, end-of-life care and in supporting those living with long-term conditions” [S7].

The impact of Chatterjee’s work in relation to wider sector support and on policy can be seen through her role as an Advisor for the APPG on Arts, Health and Wellbeing and the Culture, Health and Wellbeing Alliance (CHWA) where she chairs the Strategic Alliance Partners Committee including senior reps from the NHS, Public Health England, Local Governments Association and Arts Council England. Lord Howarth (Co-Chair of the APPG) described Chatterjee’s presence on the APPG as “an invaluable source of ideas to all involved,” in part due to her “ability to communicate technical matters intelligibly to those without her specialised expertise” [S8]. The Policy Project Manager for the Heritage Fund said that “Professor Chatterjee’s expertise within the All-Party Parliamentary Group on Arts, Health and Wellbeing has led directly to a long-term improvement in the profile and social impact of UK cultural participation, including resource allocation” [S9].

The influence of this work on wider heritage policy can be seen in its frequent citation in recent reports from key stakeholders in the heritage sector. For instance, The Heritage Alliance 2020 report, ‘Heritage, Health, and Wellbeing,’ featured a section on heritage wellbeing, saying that “Heritage can provide healing spaces and activities for people living with particular conditions, such as dementia and post-traumatic stress disorder (PTSD). This work has been spearheaded by Professor Helen Chatterjee and her colleagues at University College London” [S10]. The World Health Organisation cited [R2], [R3], and [R5] in its 2019 evidence report, ‘What is the evidence on the role of the arts in improving health and well-being?’ and a recent report commissioned by the Department for Culture, Media, and Sport cited [R5] to argue that “the evidence base on arts and social cohesion is strong and can be trusted to guide policy development” [S10].

5. Sources to corroborate the impact

[S1] Todd, C., Camic, P. M., Lockyer, B., Thomson, L., & Chatterjee, H. J. (2017). Museum-based programs for socially isolated older adults: Understanding what works. Health & place, 48, 47–55. DOI 10.1016/j.healthplace.2017.08.005

[S2] Testimonial from Head of evidence unit, Personalised Care Group, NHS England and NHS Improvement

[S3] Testimonial from Assistant Curator, Community Programs at the Art Gallery of Ontario, Canada

[S4] Thomson, L., Morse, N., Elsden, E., & Chatterjee, H. (2020). Art, nature and mental health: assessing the biopsychosocial effects of a ‘creative green prescription’ museum programme involving horticulture, artmaking and collections. Perspectives in Public Health, 140(5), 277–285. DOI 10.1177/1757913920910443

[S5] Testimonial from Head of Outreach, Tyne and Wear Archives and Museums.

[S6] Fiddian-Qasmiyeh, E. (2020). Refuge in a Moving World: Tracing refugee and migrant journeys across disciplines. London: UCL Press. (p334) [Available on Request]

[S7] APPG on Arts, Health and Wellbeing Inquiry Report: Creative Health: The Arts for Health and Wellbeing, (July 2017) Second Edition. https://www.culturehealthandwellbeing.org.uk/appg\-inquiry/

[S8] Testimonial from Lord Alan Howarth of Newport, Co-Chair of the APPG AHW

[S9] Testimonial from Policy Project Manager, Heritage Fund and former Curator, Community Learning at Tate Modern (2006-2014)

[S10] Heritage sector policy documents citing Chatterjee’s research:

Submitting institution
Birkbeck College, Institute of Zoology, University College London (joint submission)
Unit of assessment
5 - Biological Sciences
Summary impact type
Environmental
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

Between August 2013 and December 2020, African governments developed conservation action plans for cheetahs and African wild dogs covering 1.6 million km2, appointed 14 national coordinators to oversee the plans’ implementation, and enabled new, on-the-ground cheetah and wild dog conservation across 645,000km2. This impact builds upon research by Institute of Zoology (IoZ) Professors Sarah Durant and Rosie Woodroffe conducted between 2000 and 2020, showing that cheetahs and African wild dogs require conservation at vast spatial scales, achievable only through sustainable co-existence with people and domestic animals. The same research also underpins a new international policy framework jointly established by the Convention on Migratory Species and the Convention on International Trade in Endangered Species.

2. Underpinning research

The cheetah ( Acinonyx jubatus) and the African wild dog ( Lycaon pictus) are two of the world’s most highly threatened species, both persisting in a small fraction of their former geographic ranges. IoZ Professor Sarah Durant directs the world’s longest-running study of cheetah ecology and behaviour, in Serengeti National Park, Tanzania, while IoZ Professor Rosie Woodroffe established the first study of African wild dogs living outside protected areas, in the rangelands of northern Kenya. By tracking the fates of hundreds of individual cheetahs and wild dogs across multiple generations, these two long-term studies (cheetah: between 1974 and 2021, wild dog: between 2001 and 2021) have yielded ecological insights which have revolutionised conservation efforts for these and other large carnivore species.

Cheetahs and wild dogs share two unusual traits: relative to other carnivores of similar size, both species live at very low population densities, and range across very large areas. An innovative behavioural study, published by Durant in 2000, highlights the mechanism underlying these traits: cheetahs risk losing their kills, and their lives, to lions and hyaenas so they move into areas where prey are less abundant and predation risks are therefore lower [R1]. The consequently low population densities and wide-ranging behaviour of these two species mean that cheetahs and wild dogs require conservation on geographic scales seldom considered in terrestrial ecosystems.

Studies of population dynamics highlight additional challenges to conserving these two species. In 2000, Durant and her team showed that cheetahs naturally experience high cub mortality, with even small increases predicted to extirpate populations [R2]. This pattern means that removing cubs from wild populations, which occurs through the illegal pet trade, poses a serious extinction risk for cheetahs. This high cub mortality also means that adults which are killed (e.g. by farmers) may not be replaced, likewise risking extinction [R2].

Wild dogs’ sociable nature generates population dynamics that are very different from those of cheetahs, but equally problematic. In 2019, Woodroffe showed that members of larger packs survive better, and produce larger litters, but the loss of a single dominant animal can cause the whole pack to collapse [R3]. This pattern generates boom-and-bust dynamics which can trigger local extinctions with little prior warning [R3]. Woodroffe’s earlier (2012) work shows that such impacts are especially likely where diseases such as rabies, caught from domestic dogs [R4], can kill whole packs and devastate wild dog populations.

Despite these threats, Woodroffe and Durant have shown that cheetahs and wild dogs can persist in some human-dominated landscapes, where lower densities of competing predators may counteract anthropogenic threats [R2]. In 2019, Woodroffe showed that wild dogs living among traditional pastoralists and on private cattle ranches survived just as well as those in protected areas [R3], while in 2017 Durant showed that 77% of remaining cheetah range falls on such non-protected lands [R5].

Durant’s 2017 modelling shows how the two species’ tendency to range indiscriminately across protected and unprotected lands means that human pressures on unprotected lands can potentially extirpate them both inside and outside reserves [R5]. Both authors have therefore sought sustainable ways to protect these species while also benefiting local people, for example through Woodroffe’s 2007 studies on traditional husbandry to reduce predation on livestock [R6], and her 2012 prediction that domestic dog vaccination should prevent rabies in both people and wild dogs [R4].

3. References to the research

[R1] Durant, S. M. (2000). 'Living with the enemy: avoidance of hyenas and lions by cheetahs in the Serengeti'. Behavioral Ecology 11, 624-632. DOI: https://doi.org/10.1093/beheco/11.6.624 (Citations: 258).

[R2] Kelly, M. J. & Durant, S. M. (2000). 'Viability of the Serengeti cheetah population'. Conservation Biology 14, 786-797.DOI: http://doi.org/doi:10.1046/j.1523-1739.2000.98329.x (Citations: 85).

[R3] Woodroffe, R., O’Neill, H. M. K. & Rabaiotti, D. (2019). 'Within- and between-group dynamics in an obligate cooperative breeder'. Journal of Animal Ecology 89, 530-540. DOI: https://doi.org/10.1111/1365-2656.13102 (Citations: 5).

[R4] Woodroffe, R. et al. (2012). 'Contact with domestic dogs increases pathogen exposure in endangered African wild dogs ( Lycaon pictus)'. PLoS ONE 7, e30099, DOI: http://doi.org/10.1371/journal.pone.0030099. (Citations: 97).

[R5] Durant, S. M. et al. (2017). 'The global decline of cheetah Acinonyx jubatus and what it means for conservation'. Proceedings of the National Academy of Sciences of the United States of America 114, 528-533. DOI:http://doi.org/10.1073/pnas.1611122114. (Citations: 106).

[R6] Woodroffe, R., Frank, L. G., Lindsey, P. A., ole Ranah, S. M. K. & Romañach, S. S. (2007). 'Livestock husbandry as a tool for carnivore conservation in Africa's community rangelands: a case-control study'. Biodiversity and Conservation 16, 1245-1260. DOI: http://doi.org/ 10.1007/978-1-4020-6320-6_28 (Citations: 185).

4. Details of the impact

The research finding that cheetahs and wild dogs require conservation across geographic scales seldom considered in terrestrial ecosystems inspired Durant and Woodroffe to address this challenge by establishing, in 2006, the Range Wide Conservation Programme for Cheetahs and African Wild Dogs (RWCP). This programme works with national governments, non-governmental organisations, and other partners to support and encourage conservation of the two species on the vast geographical scales needed, across protected and unprotected lands, within and across national borders [S1, S2]. Informed by Durant and Woodroffe’s research, between 2013 and 2020 the RWCP:

  • Developed national conservation action plans for cheetahs and wild dogs in partnership with seven range state governments (Algeria, Angola, Benin, Chad, Namibia, Niger, and Tanzania) and local non-governmental organisations, together covering 1.6 million km2 of known cheetah range and over 500,000 km2 of known wild dog range [S1], [S2], [S3], [S4]. In developing and implementing these plans, national wildlife authorities have learned to address the unique conservation challenges posed by these very wide-ranging predator species [S1], [S3], [S4].

  • Reviewed and updated the International Union for Conservation of Nature/Species Survival Commission’s IUCN/SSC regional strategic plan for the conservation of cheetahs and African wild dogs in southern Africa, and reviewed and updated three national conservation action plans for cheetahs and wild dogs in partnership with three range state governments (Botswana, Zimbabwe and Zambia) [S1], [S2]. This process allowed national wildlife authorities to take stock of progress to date, to incorporate new research, and to revise and update their plans in line with progress and current scientific research [S1], [S2].

  • Developed national capacity for cheetah and wild dog conservation by training, mentoring and supporting National Coordinators in 14 range states, to oversee the implementation of new and existing National Action Plans [S1], [S2], [S3], [S4], [S5], [S6]. Each of these Coordinators is embedded within their national wildlife authority, and their training has included sustainable ways to protect these species while also benefiting local people, allowing cheetahs and wild dogs to survive in human-dominated landscapes [S6].

  • Supported the Convention on Migratory Species (CMS) to establish a new policy initiative (the African Carnivores Initiative) in partnership with the Convention on International Trade in Endangered Species (CITES) [S1], [S7]. This joint Initiative, which started work in 2018, provides an international framework to promote cheetah and wild dog conservation on the huge geographic scales needed, including a recommendation to “ establish a national coordination structure based on the Range Wide Conservation Programme for Cheetah and Wild Dog to provide technical support, training and mentoring to coordinators and a platform for regular meetings” [S7].

  • In partnership with national governments and local experts, facilitated developing the first conservation plans for the species in two Trans-Frontier Conservation Areas (TFCAs); the Kavango-Zambezi TFCA in Botswana/Namibia/Angola/Zambia/ Zimbabwe (>500,000km2), and the W-Arly-Pendjari-Oti-Mandouri TFCA in Benin/Burkina Faso/Niger/Togo (23,000km2), promoting cheetah and wild dog conservation across international borders [S2], [S4].

  • Established a new conservation initiative in the W-Arly-Pendjari-Oti-Mandouri TFCA (23,000km2) to secure habitat and prey for the last cheetah population in West Africa [S2], [S4].

  • Developed a carnivore management plan for the Tsavo ecosystem in Kenya/Tanzania (24,421km2, in partnership with Kenya Wildlife Service, Kenyan NGO Osilalei, and local stakeholders) [S2], [S5], and a management plan for Luando National Park in Angola (8,737km2, in partnership with the Angola Ministry of Environment) [S2].

  • Discovered two previously unknown populations of African wild dogs covering 13,000km2 in the course of surveying protected areas across Angola, a country recovering from decades of conflict [S8].

  • Initiated a new on-the-ground project in Zambia, to help local communities to coexist with wild dogs, cheetahs, and other wildlife, hence securing a vital but unprotected wildlife corridor which connects wild dog and cheetah range in Kafue National Park (30,680km2), to range in the Kavango-Zambezi TFCA (558,189km2) [S1], [S2].

In addition, demographic evidence that the illegal pet trade poses a serious extinction risk for cheetahs prompted RWCP to:

  • Work through CITES to raise awareness of the illegal trade in cheetahs among range states, transit, and destination countries. This resulted in a formal assessment of the impact of trade on cheetah populations (which lists RWCP as one of the organisations contributing information), and establishment of a cheetah working group within CITES, with Durant as a member [S1].

  • Provide the first CITES Illegal Trade Resource Kit, to be used by customs and other enforcement officials across the world to address illegal trade in cheetahs, including identifying cheetahs and cheetah products, and ensuring that any confiscated cheetahs are managed appropriately [S1], [S2].

Moreover, Woodroffe’s evidence that rabies caught from domestic dogs can kill whole packs and devastate wild dog populations prompted her Kenyan PhD student, Dedan Ngatia, to establish the Laikipia Rabies Vaccination Campaign (LRVC), which aims to protect both people and wild dogs by vaccinating domestic dogs [S10]. Although the World Health Organisation aims to eradicate human rabies by 2030, most efforts have targeted urban areas. Drawing tangible links between human and wildlife health has encouraged donors to support rural rabies control [S1], and the LRVC, which is conducted in partnership with Kenya’s national and county governments, and local communities, is estimated have prevented approximately 75 human rabies deaths since its establishment in 2015 [S5]. Under the auspices of the RWCP, Woodroffe’s team is now using evidence from their own research, and the experience of the LRVC, to develop disease management plans for wild dogs in Kenya, which are expected to provide a model for other wild dog conservation projects throughout Africa [S1], [S5].

In a recent independent review after 13 years of operation using the Conservation Excellence Model (CEM), the Range Wide Conservation Programme for Cheetah and African Wild Dogs was assigned a score of greater than 500. The assessors noted, that: “ *For comparison, amongst programmes previously assessed against CEM, only two other programmes achieved assessment scores in excess of 500 points, both of which have been established more than 20 years)*” [S2].

5. Sources to corroborate the impact

[S1] Testimonials from the Chairs of the IUCN/SSC Cat Specialist Group and the IUCN/SSC Canid Specialist Group.

[S2] Final project report for Phase 3 of the RWCP to the Howard G Buffett Foundation describing the last five years of RWCP activities and their impacts, including a summary of an independent end of project evaluation.

[S3] Testimonial from the Director of Wildlife, Ministry of Natural Resources and Tourism, Tanzania.

[S4] Testimonial from the Division des Aire Protegées, Niger .

[S5] Testimonial from Kenya Wildlife Service.

[S6] Tropical Biology Association, Effective delivery of National Action Plans http://www.cheetahandwilddog.org/wp-content/uploads/2017/08/NCC-Course-1-Manual_2017.pdf

[S7] Convention on the Conservation of Migratory Species of Wild Animals, 1st Meeting of Range States for the Joint CMS – CITES African Carnivore Initiative (ACI1) https://www.cms.int/sites/default/files/document/cms-cites_aci1%20_outcomes.1_communiqué_e.pdf

[S8] Overton, J.M., Castells, D.E., Elizalde, S.R.F.F., Valério, H.M., Zumbo, M.N.A., Groom, R.J. & Durant, S.M. (2020). Endangered African wild dogs ( Lycaon pictus Temm.) in Angola: Filling a 50‐year gap of knowledge with findings from two National Parks. African Journal of Ecology 58: 582-587.

[S9] Convention on International Trade in Endangered Species of Wild Fauna And Flora, 65th meeting of the Standing Committee https://www.cites.org/sites/default/files/eng/com/sc/65/E-SC65-39.pdf

[S10] Muloi, D. & Ngatia, D (2020) Lessons from a community-driven rabies vaccination campaign in Kenya https://theconversation.com/lessons-from-a-community-driven-rabies-vaccination-campaign-in-kenya-142673

Submitting institution
Birkbeck College, Institute of Zoology, University College London (joint submission)
Unit of assessment
5 - Biological Sciences
Summary impact type
Societal
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

Professor Nick Lane (UCL Genetics Evolution and Environment) published his highly regarded popular science book, The Vital Question, in 2015, based on his pioneering research on energy flow in evolution, stretching from the origin of life to the diseases of old age. The book has changed public and media perceptions about the probability and nature of life in the universe, and its impact has been amplified through ensuing high-profile public engagement work on films, TV and radio programmes. The Vital Question has directly shaped science funding, notably the NASA Icy Moons programme and the USD 4,000,000,000 Europa Clipper Mission.

2. Underpinning research

Lane’s research examines the role of energy flow in structuring evolution. For decades, research on evolution has been grounded in genes and information, using phylogenetic analyses to understand the tree of life. Yet the evolutionary trajectory of life on Earth does not correspond to genetic information: bacteria have explored far more sequence space than complex (eukaryotic) cells, but never evolved equivalent complexity at the level of cells, organisms or genomes – there are no plants or animals composed of bacterial cells, despite their great genetic versatility. Lane’s research explores the deep constraints imposed on all life by membrane bioenergetics, from their postulated origin in structured geological environments (such as hydrothermal vents) to a singular endosymbiosis between two prokaryotes that gave rise to the first eukaryotes, to the fundamental implications of the requirement for eukaryotic cells to maintain two unequal genomes, nuclear and mitochondrial. Lane’s work has challenged the gene-centric view of evolution and medicine through rigorous experimental and computational methods that elucidate the constraints that energy flow places on genes, with implications ranging from the search for life in space to age-related disease.

Using this pioneering bioenergetic perspective, Lane’s underpinning research has focused on (i) the origin of life, (ii) the emergence of complex cells and (iii) traits shared by all complex life, such as sex and ageing. These research themes are outlined below, citing a selection of Lane’s primary papers that represent the research underpinning the ideas synthesized in The Vital Question.

  1. The origin of life. Lane won the UCL Provost’s Venture Research Prize for transformative research in 2009, which enabled him to lead research on the origin of life across three faculties at UCL through the UCL Research Frontiers Origins of Life Initiative, and later the UCL Centre for Life’s Origins and Evolution (CLOE). Lane’s research has explored the parallels between the membranes of ancient bacteria and archaea and the inorganic pores in hydrothermal systems, where proton gradients across inorganic barriers drive CO2 fixation and growth, giving a new perspective on the origin of cells [R1]. Lane’s group has developed mathematical models

  2. Evolution of complex cells. Lane’s hypothesis paper on the energetics of genome complexity, based on an analysis of energy per gene [R4], has stimulated much discussion in the academic literature, including papers and articles in eLife, PNAS and Current Biology. Lane’s theoretical modelling work in collaboration with Professor Andrew Pomiankowski and CoMPLEX (the UCL Centre for Maths and Physics in the Life Sciences and Experimental Biology) has used rigorous mathematical approaches to explore major transitions in evolution. These range from the origin of the genetic code to the evolution of sex, two sexes and the female germline in relation to the requirement to select for high-quality mitochondrial DNA [R5]. Each of these transitions involves a restructuring of energy flow in relation to genetic information, enabling major leaps in the potential of life.

  3. Adaptation and complex traits. Lane’s experimental work on mitochondrial energetics focuses on mitonuclear interactions using Drosophila as a model organism. Lane has collaborated across UCL through his founding co-leadership of the UCL Consortium for Mitochondrial Research. Lane authored a theory paper outlining an original hypothesis on the relationship between fertility and longevity based on interactions between mitochondrial and nuclear genes [R6]. Designated the ‘Lane hypothesis’ by others, it has been formally tested and supported with experimental approaches (Dobler et al, Human Reproduction Update, 24, 519–534; 2018). This research has implications for adaptation to changing environments and speciation, as well as to personalised medicine, being lauded by the BBSRC as potentially founding a new field of ‘pharmacomitogenomics’.

Lane’s underpinning research has been supported by grants from the BBSRC, EPSRC, Gates Ventures and Leverhulme Trust, totalling more than GBP5m. His full body of research entails more than 50 peer-reviewed papers since Lane joined UCL in 2009, cited more than 6,000 times (18 papers more than 100 times). The quality of Lane’s research is testified by prestigious awards including the BMC Research Award for Genetics, Genomics, Bioinformatics and Evolution (2011) and the Biochemical Society Award (2015).

3. References to the research

[R1] Lane N, Martin WF. (2012). ‘The origin of membrane bioenergetics’. Cell 151, 1406–12.273 citations. Altmetric score: 81 (top 2% all articles of same age). DOI: https://doi.org/10.1016/j.cell.2012.11.050

[R2] Sojo V, Pomiankowski A, Lane N. (2014). ‘A bioenergetic basis for membrane divergence in archaea and bacteria’. PLOS Biology 12, e1001926. 86 citations, Altmetric score: 119 (top 1% all articles of same age). DOI: https://doi.org/10.1371/journal.pbio.1002102

[R3] Jordan SF, Rammu H, Zheludev I, Hartley AM, Marechal A, Lane N. (2019). ‘Promotion of protocell self-assembly from mixed amphiphiles at the origin of life’. Nature Ecology and Evolution 3, 1705–1714 21 citations. Altmetric score: 281 (top 1% all articles of same age). DOI: https://doi.org/10.1038/s41559-019-1015-y

[R4] Lane N, Martin W. (2010). ‘The energetics of genome complexity’. Nature 467, 929–934. 916 citations. Altmetric score 127 (top 1% all articles of same age). DOI: https://doi.org/10.1038/nature09486

[R5] Radzvilavicius A, Hadjivasiliou Z, Pomiankowski A, Lane N. (2016). ‘Selection for mitochondrial quality drives evolution of the germline’. PLOS Biology 14, e2000410; 37 citations. Altmetric score: 203 (top 1% all articles of same age). DOI: https://doi.org/10.1371/journal.pbio.2000410

[R6] Lane N. (2011). ‘The costs of breathing’. Science, 334, 184–185.. 43 citations. Altmetric score: 28 (top 3% all articles of same age). DOI: https://doi.org/10.1126/science.1214012

4. Details of the impact

Lane’s pioneering reconception of the evolution of life in energetic terms has had global reach and influence through his 2015 book The Vital Question. This book synthesised his research on energy flows and the origin of life, the evolution of complex cells, and the adaptation of complex traits into an accessible exploration of life, reproduction, ageing, and death. By translating his research into this popularly written form, Lane’s research has had four main areas of impact: It has reshaped public perception of evolution; reached millions through extensive media impact; inspired students and the public to engage with and study science; and generated funding and enthusiasm for space missions.

Reshaping media and public perception of evolution

The Vital Question, has sold more than 100,000 copies globally and been translated into 14 languages [S1]. Describing it as “ one of the deepest, most illuminating books about the history of life to have been published in recent years”, The Economist selected it as a book of the year, as did Nature, New Scientist, The Times, FT, Independent, Sunday Times, Telegraph and the Wall Street Journal [S1]. Reviews highlight how Lane’s view of energy has transformed our understanding of life as a cosmic process by challenging the long-established gene-centric mind set. Peter Forbes wrote in the Guardian that “Lane’s theories are ingenious, breathtaking in scope and challenging in every sense… intellectually what Lane is proposing, if correct, will be as important as the Copernican revolution.” This challenge to conventional scientific thinking was echoed by Peter Requarth in the New York Times, who wrote that “Dr Lane’s broad perspective, which attempts to address the origins of life, sex and death, is seductive and often convincing… Dr Lane’s many predictions, however incredible they seem, are testable and could keep scientists busy for years.” Likewise, the geneticist Ravinder Kanda was challenged, writing in the Times Literary Supplement that Lane “approaches the question of the origin of life from a very different perspective: energy…. He certainly made me think about the question from a standpoint that is very different from the one I’m used to as a geneticist.”

The impact of The Vital Question was recognised by the Royal Society Michael Faraday Prize, the UK’s premier award for excellence in science communication. Lane’s prize lecture has been viewed more than 50,000 times on YouTube. The Chair of the Royal Society public engagement committee in 2016 commented that the book “inspired individuals to embrace science and engineering as a career choice and motivated non-scientists to use evidence-based approaches to address current and key scientific issues affecting humanity” [S2].

These reviews brought The Vital Question to the attention of Bill Gates, who addressed the role of energy in human health on his GatesNotes blog, Facebook and Twitter, with a review and video feature viewed more than 300,000 times on Facebook, with 25,000 shares, 11,000 loves and 1,200 comments [S3]. Gates called attention to Lane’s “attempt to right a scientific wrong by getting people to fully appreciate the role that energy plays in all living things… Lane’s focus on energy will be seen as an important contribution to our understanding of where we came from, and where we are going.” Gates was inspired by the practical applications of Lane’s work: “Our foundation’s global health team is talking to Nick about potential implications for the fight against malnutrition” [S3]. Lane has been regularly consulted by the President of Global Health at the Gates Foundation, who states in an email that he met with “Bill Gates and select scientific leaders” to give one of “a small number of updates on key scientific policy issues”. Lane led a discussion on the applications of his research as a springboard “for a candid conversation about the future of R&D and how emerging scientific innovations can support efforts to tackle the world’s greatest health challenges” [S3].

Generating excitement around, and funding for, space missions

The Vital Question has generated excitement and funding for NASA space missions. A former NASA Associate Administrator for Science wrote that “ I found the book inspirational in presenting a likely pathway to the origins of life on Earth, and on ice-covered ocean worlds such as the moon of Jupiter, Europa, and of Saturn, Enceladus. Working with NASA, the Administration (Office of the President), and Congress, I helped to create an Icy Worlds Research program, and initiated the Europa Clipper Mission, led by the NASA Jet Propulsion Laboratory. The Vital Question provided me a sound scientific basis (I’m an astrophysicist) for my support for those planetary science programs” [S4]. The funding committed to the Europa Clipper Mission alone totals USD4bn. This former NASA Associate Administrator and the Director of NASA’s Space Telescope program commissioned Lane to feature in a film, ‘The Hunt for Planet B’, which was designed to generate excitement around the launch of the USD10bn James Webb space telescope in October 2021. With “ unprecedented access to NASA’s high-stakes James Webb Space Telescope”, the film is being launched at the influential SXSW Film Festival in March 2021, and will be placed on one of the major streaming TV outlets (Netflix, Amazon, HBO, Discovery, CNN) [S5]. The Producer of ‘The Hunt for Planet B’ wrote that Lane is “ essential to the film,” as he “ made us understand what life is and what we might find in the universe” [S5].

Lane helped raise awareness and generate excitement for Breakthrough Initiatives’ mission to Saturn’s moon, Enceladus. He was interviewed as one of four prominent astrobiologists for a short film designed to raise awareness of the big questions around life in the universe among prominent technology and internet entrepreneurs around the world, with a view to raising funding for potential small-scale space missions to explore some of these questions. The film was shown at five private events between 2017 and 2018, in London, Berlin, Bangalore, Beijing and San Francisco, where it was viewed by leading figures from the tech engineering and investment sectors of those countries [S5]. The Creative Director of Breakthrough Initiatives wrote that Lane “ offered crucial insights into the origin of life on Earth and the chemistry of primaeval deep-sea hydrothermal vents…both his expertise and his infectious excitement about the science played a big part in the excellent response to the film at all the events" [S5]. The film assisted Breakthrough Initiatives to sign a contract with NASA in 2018 to create the concept for a flyby mission to probe the plumes of Enceladus, the first privately funded deep-space mission.

Conveying the excitement of astrobiology to millions through media impact

In part because Bill Gates thrust the book into the spotlight, The Vital Question inspired widespread interest across the media. As a result, Lane has engaged with millions through broadcast media on the question of planetary life. He appeared as an expert on Horizon ‘Oceans of the Solar System’ (BBC2, 2016; [TEXT REMOVED FOR PUBLICATION])), ‘It’s Not Rocket Science’ (ITV, 2016; [TEXT REMOVED FOR PUBLICATION]) and ‘Secrets of the Solar System’ (CuriosityStream/ Yesterday, 2020). Lane has advised on the making of other programmes, including ‘One Strange Rock’ (National Geographic, 2018, with over 100 million viewers worldwide [S6] and ‘Forces of Nature’ (BBC with Brian Cox, 2016; 2 million viewers worldwide). He was scientific consultant and featured as an on-screen expert on the US/international version of episode two, ‘Mars and Earth’ for Brian Cox’s ‘The Planets’, made by the BBC and screened by NOVA in the US ([TEXT REMOVED FOR PUBLICATION]). On national radio, Lane has been interviewed on BBC Radio 4’s ‘The Life Scientific’ (2016), ‘In Our Time’ (2018, 2015, each listened to approximately 3 million times), ‘Infinite Monkey Cage’ (2016), ‘Inside Science’ (2018, 2017), ‘Today Programme’ (2015) and ‘Start the Week’ (2015). A book celebrating 20 years of ‘In Our Time’ shows how much Lane’s ideas have engaged the public. The book features 50 programmes (of which 10 are on science) from over 900 recorded. The Producer of ‘In Our Time’ wrote: “[We] have been looking at the programmes that listeners say they’ve enjoyed the most and, while it’s a very long list, we’ve chosen ‘Photosynthesis’ [featuring Lane] as one of those for the Science section. It has proved a very popular edition since it was broadcast” [S6]. Online platforms featuring Lane’s work include Aeon, Nautilus, Buzzfeed and Radiolab (with 12 million listeners to the podcast and radio show) [S6]. The inspirational impact of Lane’s engagement is captured in an email from Scientific Director of the University of California Berkley Innovative Genomics Institute, who wrote: “I loved the recent episode of Radiolab… I have assigned the Radiolab episode featuring yourself to my students this semester in Genetics and Society, and will do so next semester in Biology for Voters” [S6].

Inspiring students and the public to engage with and study science

The Vital Question is now widely recommended on reading lists at universities including Oxford and Cambridge (e.g. ‘So You Want to Go to Oxbridge? Tell me about a Banana’) and in online student forums e.g. the Student Room. Since 2015 Lane has given more than 20 talks in schools. Lane’s writing has inspired pupils who would not have considered STEM to take a biology degree; UCL admissions records show that 50% of students cite Lane’s book on their UCAS form as an inspiration for applying to study biology. A teacher at Colchester Royal Grammar wrote: “I wanted to let you know the lasting impact your lecture had for my students. Many are now in year 13 and have been busily writing their personal statements for UCAS this term. Quite a few of them mention your talk, and the additional reading that this then led them to undertake. One student in particular wrote extensively about his learning from your books and is today being interviewed at Oxford for Biological Sciences!” [S7]. Lane spoke at two Molecular Frontiers events for schools at the Swedish Royal Academy of Sciences (in 2019 and 2017), and featured in an inspirational short video for students [S8]. He has given over 30 public talks at science and literary festivals since 2015. Reaching more than 15,000 people directly, many of these talks were recorded and are available on YouTube, where they have had more than 300,000 views [S1]. The reach of Lane’s ideas is illustrated by a transmission on the South American YouTube channel Migala, viewed live by over 30,000 people, despite being in English. The host Pepe wrote that the transmission was so inspirational that “people in the chat started to translate the conversation for those who couldn’t understand. Also, a couple volunteers started working on the Spanish subtitles already, so a lot more people are going to listen to it” [S9].

Eric Idle, of Monty Python fame, attended one of Lane’s public lectures in 2016 and was inspired to write a musical on the subject of death—one of the key topics explored in The Vital Question. He emailed to say: “As I have only a bare pass in O level Physics with Chemistry and that’s my only science it is a compliment to you to say how much fun I find [your writing]… I think laymen are intrigued by things that really exist in the Universe. We can’t help it. You do a great job of explaining. I’ve been working on a new musical which deals with the subject of death and I would like to fact check it. It’s for ‘Death the Musical’… My play seeks to cheer people up in the face of their own mortality. Bright Side and all that...” [S10].

5. Sources to corroborate the impact

[S1]: letter from Profile books/United Agents to confirm these numbers.

[S2]: Email from Prof Russell Foster, Chair of Royal society public engagement committee in 2016; lecture: https://royalsociety.org/science-events-and-lectures/2017/02/faraday-prize-lecture/

[S3]: https://www.gatesnotes.com/Books/The-Vital-Question; https://twitter.com/BillGates/status/729796241064927233; https://www.facebook.com/BillGates/videos/the-vital-question-with-nick-lane/10153567282026961/; Email from Trevor Mundel, President, Global Health, Gates Foundation.

[S4]: Email from former NASA Associate Administrator for Science John Grunsfeld.

[S5]: Emails from Nathaniel Kahn and Bonnie Hlinomaz, (Director and Producer of The Hunt for Planet B) and Adam Rosenthal (Creative Director of Breakthrough Prize).

[S6]: Testimonials confirming media impact of The Vital Question:

  • Email from Sophie Mautner, Nutopia, confirming National Geographic and Netflix viewing figures.

  • Email from Simon Tillotson, Producer of ‘In our Time’.

  • Email from Robert Krulwich, co-host of ‘Radiolab’ and Fyodor Urnov, listener and teacher.

[S7]: Email from Ayala Daisly, Colchester Royal Grammar School.

[S8]: Prof Lane featured in inspirational film about how Molecular Frontiers symposia engage with schools: https://www.youtube.com/watch?v=2oluTiaxB5s&t=5s.

[S9]: Email from Jose Luis Hernandez, ‘Pepe’, host of Migala YouTube channel.

[S10]: Email from Eric Idle of Monty Python about ‘Death the Musical’.

Submitting institution
Birkbeck College, Institute of Zoology, University College London (joint submission)
Unit of assessment
5 - Biological Sciences
Summary impact type
Environmental
Is this case study continued from a case study submitted in 2014?
No

1. Summary of the impact

As exemplified by the current COVID-19 global pandemic, the health and economic consequences of spill-overs of wildlife diseases into human populations can be devastating. Research carried out by scientists at the University College London (UCL) and the Institute of Zoology (IoZ) has improved the understanding of how ecological, epidemiological and socioeconomic factors interact to drive spill-overs of these ‘zoonotic’ diseases into humans. The research has informed global zoonotic disease research funding priorities, for example guiding wildlife disease surveillance efforts (USAID’s PREDICT programme); international policy priorities through the United Nations (UN), Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES), and World Wide Fund for Nature (WWF); and public health responses to disease outbreaks through the Foreign Commonwealth and Development Office (FCDO), as well as improving public understanding of links between the extinction and climate crises on zoonotic disease spill-over risk.

2. Underpinning research

Animal-borne (zoonotic) diseases are a major global human health and economic burden but, for many diseases, little is known about the underlying drivers of spill-overs, severely hindering effective public health responses to prevent and manage future outbreaks. UCL and IoZ researchers have made seminal contributions to understand zoonotic spill-over risk by identifying and quantifying what drives transfer of diseases from wildlife to people, predicting emerging disease hotspots, and developing a unifying interdisciplinary framework to inform disease management in a changing world.

Drivers of zoonotic spill-over and identification of disease hotspots

In 2000, IoZ research (undertaken by Cunningham, now a professor at IoZ) co-developed a new paradigm for the links between ecology and human health in a seminal synthesis where infectious agents (or pathogens) harboured by wildlife were highlighted as the source of a series of high-impact, human diseases (zoonoses), for example Ebola, Nipah and HIV/AIDS [R1]. The synthesis identified that the emergence of these diseases was driven by human activities, such as changes in hunting practices, encroachment into remaining wildlife habitats and a growing international trade in wildlife. This paper provided a scientific rationale for what is now known as ‘One Health’ – an approach to designing and implementing programmes, policies, legislation and research in which multiple sectors communicate and work together to achieve better public health outcomes. At IoZ, this idea was further developed by Jones in 2008 (first funded by a UKRI research fellowship at IoZ from 2005 to 2012 and now a professor at UCL), with the first quantitative analysis of global patterns of human disease emergence [R2]. This research demonstrated that the rate of disease emergence was increasing, that the majority of human infectious diseases were from wildlife, and that areas of high biodiversity and increased human population densities correlated with past emergence of zoonotic disease [R2]. Additionally, Jones’ analyses identified ‘emerging disease hotspots’: regions where new emerging infectious diseases are most likely to originate. Jones concluded that global resources to counter disease emergence are poorly allocated, with the majority of the scientific and surveillance effort currently focussed on countries where the next important emerging infectious disease is least likely to originate. Synthesising these global results with existing experimental studies in 2010 [R3], Jones importantly highlighted growing evidence of the negative impact of the Anthropocene on infectious disease risk through biodiversity loss.

Preventing and managing disease spill-overs in a changing world

In 2012, a joint IoZ-UCL NERC-funded research project within the Ecosystem Services for Poverty Alleviation (ESPA) programme, Jones and Cunningham (also funded by the Royal Society) co-led the development of a novel framework to operationalise the ecological, social and economic conditions that facilitate zoonotic disease emergence and transmission. This framework would inform appropriate interdisciplinary responses for prevention and management of such diseases [R4]. This holistic, interdisciplinary framework which put into operation the ‘One Health’ approach, brought together natural and social sciences perspectives to provide an effective framework for understanding the management and mitigation of the risks of emerging infectious diseases. This framework was used in research led by Redding (from 2012 to 2020, initially as a PDRA at UCL on the NERC project and then funded from a MRC research fellowship, and subsequently on a Sir Henry Dale Royal Society fellowship at IoZ from 2020 onwards), and supported by Jones and Cunningham (funded by MRC GCRF and EC FP7). Their research quantified how socio-ecological changes in biodiversity, habitat, land use, poverty and climate affect risk of animal-to-human disease spill-over in a number of high impact disease systems, such as Lassa fever [R5] and Ebola [R6]. These disease-forecasting models have improved knowledge of how spill-over dynamics are affected by present and future global changes, such as climate, land use and urbanisation.

3. References to the research

IoZ/UCL staff contributions in bold.

[R1] Daszak, P., Cunningham, A.A. and Hyatt, A.D. (2000). ‘Emerging infectious diseases of wildlife: threats to biodiversity and human health’. Science 287, 443 - 449. DOI: http://doi.org/ 10.1126/science.287.5452.443 (Altmetric Citations: 2524, Altmetric Score: 63 - 97th percentile of 16,763,248 research outputs).

[R2] Jones, K.E., Patel, N.G., Levy, W.A., Storeygard, A., Balk, D., Gittleman, J.L. and Daszak, P. (2008). ‘Global trends in emerging infectious diseases’. Nature 451, 990-993. DOI: http://doi.org/ 10.1038/nature06536 (Altmetric Citations: 3415, Altmetric Score: 2048 - 99th percentile of 16,888,555 research outputs,).

[R3] Keesing, F., Belden, L.K., Daszak, P., Dobson, A., Harvell, C.D., Holt, R.D., Hudson, P., Jolles, A., Jones, K.E., Mitchell, C.E., Myers, S.S., Bogich, T. and Ostfeld, R.S. (2010). ‘Impacts of biodiversity on the emergence and transmission of infectious diseases’. Nature 468, 647–652. DOI: https://doi.org/10.1038/nature09575 (Altmetric Citations: 920, Altmetric Score: 410 - 99th percentile of 16,697,177 research outputs).

[R4] Wood, J.L.N., Leach, M., Waldman, L., MacGregor, H., Fooks, A.R., Jones, K.E., Restif, O., Dechmann, D., Hayman, D.T.S., Baker, K.S., Peel, A.J., Kamins, A.O., Fahr, J., Ntiamoa-Baidu, Y., Suu-Ire, R., Breiman, R.F., Epstein J. and Cunningham, A.A. (2012). ‘A framework for the study of zoonotic disease emergence and its drivers: spill-over of bat pathogens as a case study’. Philosophical Transactions of the Royal Society, Series B. 367, 2881-2892. DOI: http://doi.org/ 10.1098/rstb.2012.0228 (Altmetric Citations: 124, Altmetric Score: 57 - 97th percentile of 16,641,846 research outputs).

[R5] Redding, D.W., Moses, L.M., Cunningham, A.A., Wood, J.L.N., and Jones, K.E. (2016). ‘Environmental‐mechanistic modelling of the impact of global change on human zoonotic disease emergence: a case study of Lassa fever.‘ Methods in Ecology and Evolution. 7, 646-655. DOI: https://doi.org/10.1111/2041\-210X.12549 (Altmetric Citations: 38, Altmetric Score: 757 - 99th percentile of 16,538,578 research outputs).

[R6] Redding, D.W., Atkinson, P., Cunningham, A.A., Lo Iacono, G., Moses, L.M., Wood, J.L.N., and Jones, K.E. (2019). ‘Impacts of environmental and socio-economic factors on emergence and epidemic potential of Ebola in Africa’. Nature Communications 7, 646–655. DOI:https://doi.org/10.1038/s41467\-019\-12499\-6 (Altmetric Citations: 15, Altmetric Score: 339 - 99th percentile of 16,651,648 of research outputs).

4. Details of the impact

The impact of research from UCL and IoZ falls into three main areas: informing zoonotic disease research funding; influencing international policy priorities and public health responses to disease outbreaks; and improving public understanding of links between environmental change and zoonotic disease spill-over risk. As evidenced by communication from the Wellcome’s Director: “ This research has had a global impact over many years, events of the last twelve months have underlined just how critical it is to all our health here in the UK, in so many countries around the world and to global health security” [S1].

Informing research funding priorities for zoonotic diseases

UCL and IoZ research has informed funding priorities both internationally and nationally. Some key examples include:

Emerging disease hotspots information: [R2] was used as the basis for the geographical targeting of the US Government’s international aid to countries at high risk of emerging diseases. From 2008 to 2019, approximately USD1.5 billion was spent through USAID’s Emerging Pandemic Threats program, including the PREPARE, IDENTIFY, PREDICT, RESPOND, and One Health Workforce programmes. As evidenced by the Director of EcoHealth Alliance, a key partner in PREDICT: “ The maps from this paper …remain a central core of the geographic targeting for all USAID pandemic prevention work to date” [S2].

Key evidence from [R2] also contributed to the DFID (now Foreign and Commonwealth Development Office) scoping report in 2012 on the links between zoonotic disease emergence and livestock systems. This resulted in the establishment of the Zoonoses and Emerging Livestock Systems (ZELS) research programme, which allocated millions of pounds of funding to 17 projects. Updates planned on these scoping reports will inform new research programming over the next few years [S3].

Evidence from [R1], [R2] and [R3] has furthermore contributed to the 2020 IPBES report on Biodiversity & Pandemics, has influenced the establishment of the EU’s PREZODE initiative to develop fundamental and operational research to prevent and manage future zoonotic disease outbreaks [S2] and [S4].

Key evidence on zoonotic spill-over [R2], [R3], has informed the 2020 Trinity Challenge (a coalition aiming to improve the world’s protection against health emergencies, using data-driven research and analytics) representing millions of pounds of investment. Trinity Challenge Board Chair and former UK Chief Medical Officer Dame Professor said: “ Your work on identifying global hotspots and EID risk has informed a lot of our early thinking in our “Identify” category of The Trinity Challenge” [S5].

Policy and public health responses: Research conducted by UCL and IOZ researchers is among key evidence linking emerging zoonotic diseases with land use and climate change. As a result, it has informed international and national policy priorities and public health responses to disease outbreaks [S1]. Some key policy impact examples include:

  • Providing a scientific rationale and synthesis of research [R1] for ‘One Health’ multi-sector approach to improving public health outcomes which is now a major component of pandemic prevention policy around the world [S2];

  • Evidence [R1], [R2] and [R3] used for the United Nations Environment Programme (UNEP)’s rapid assessment report (2020) ‘Preventing the next Pandemic’ led to UNEP joining an alliance with the World Organisation for Animal Health (OIE), Food and Agriculture Organisation (FAO), and World Health Organisation (WHO), recognising that there was a need to strengthen the environmental dimension of One Health global efforts [S6].

  • Underpinning evidence [R1], [R2], [R3] provided to the WWF ‘Beyond Boundaries’ 2020 report contributed directly to WWF’s ongoing work to influence policy and practice in a range of areas on linkages between environmental degradation, emerging infectious disease risk and human health. One example is the organisation’s work around mitigating the risk posed by the wildlife trade, particularly in East and South East Asia [S7].

  • Evidence on the impact of ecosystem degradation on zoonotic risk [R2] was provided by in 2020 for The Dasgupta Review commissioned by the UK’s HM Treasury setting out how nature should be accounted for in economics and decision making. This will inform policy discussions at the Convention on Biological Diversity (CBD) COP 15, United Nations Framework Convention on Climate Change (UNFCCC) COP 26, and the G7 meeting in 2021 [S8]. In 2019, as evidenced by communication with the Chief Scientific Officer at FCDO: “ The Ebola risk map from Redding et al. provided important contextual information to inform discussions with ministers in our short and medium term thinking on our response to Ebola” [R6].

  • Finally, evidence on zoonotic disease emergence [R1], [R2], [R3] is informing current discussions within UK government and the G7 to develop a more strategic approach to understanding emerging zoonotic and biodiversity threats [S9].

3. Increasing public understanding of zoonotic disease risk

The research in understanding zoonotic disease spill-over processes [R1], [R2], [R3], [R4], [R5], [R6] has been communicated extensively through the international broadcast news and print media over the assessment period, thereby improving public understanding of zoonotic disease risks. Clear scientific communication has been particularly relevant during the global COVID-19 pandemic and the research team have appeared in over 150 national, specialist, and international media outlets in 2020, sharing the research with an estimated audience of over 300 million people [S11]. Highlights have included contributions to BBC Radio 4’s flagship news show the ‘Today Programme’ and its ‘Inside Science’ programme, as well as the BBC World Service. Additionally, Professor Jones gave a cross-departmental talk within the UK Government on predicting pandemics [S9] and co-wrote, with Dr Redding, a special briefing to UK Government’s Cabinet Office [S10]. This informed several of the UK prime minister’s speeches for example, to the UN Summit on Biodiversity and to the UN General Assembly in 2020 [S9], [S10]. The research also helped to provide evidence on the environmental links to the emergence of zoonotic diseases for the UK Environmental Audit Committee [S11] in 2020. Jones acted as a scientific consultant on the BBC’s Horizon programme and its ‘Extinction: the Facts’ documentary presented by David Attenborough, which covered the links between deforestation and pandemic risk.

5. Sources to corroborate the impact

5. Sources to corroborate impact

[S1] Letter from Director, Wellcome Trust, UK.

[S2] Email from Director, EcoHealth Alliance, New York.

[S3] Emails from International Livestock Research Institute, Kenya , and Livelihoods Advisor, Foreign, Commonwealth and Development Office, UK Government.

[S4] Letter from Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services, UN.

[S5] Letter from former Chief Medical Officer, UK Government, Chair of the Board of Trustees, Trinity Challenge.

[S6] Letter from World Conservation Monitoring Centre, United Nations Environmental Programme.

[S7] Letter from Chief Advisor Wildlife, World Wildlife Fund, UK.

[S8] Letter from Her Majesty’s Treasury, UK Government.

[S9] Email from Department of Environment, Farming and Rural Affairs, UK Government.

[S10] Email from Head of Adaptation, Climate Change Committee, UK.

[S11] IOZ annual report and House of Comment report. https://issuu.com/zoologicalsocietyoflondon/docs/zsl_annual_report_2019-20?fr=sMDU1OTIwNDgxMTg

Showing impact case studies 1 to 11 of 11

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